Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2557 ATGTCAGGTCCTCTGTGTTTTGAGAACCCGCCGACCCGGAGCTCAGGTACCAATGGTGAAGGGACCGTCCAGGAACTTGGAGGACTTAAAACATATGTCACCGGACCTCCTGATTCCAAACTAGCCATCCTTCTAATTTCTGACGTATTTGGGTTTGAAGCACCAAACCTAAGGAAACTTGCAGATAAAGTGGCATCGGAGGGATTCTTGGTTGTTGTTCCTGATCTTCTGTATGGTGACTACTTTGATCTAGACAATCCTCAATTTGATAGAGTCTCATGGAAAAAGGCTCATGCAACGGATAAGGGATGTGAAGATACGAAGCCTCTTATTGCTGCTCTTAAGAGTAAAGGTGTAACTGCCATAGGAGCTGCAGGCTTCTGCTGGGGAGCTGTTGTGGTAGTTAAATTAGCAAGTTCCAGTGACATTCAGGCTGCAGTGCTGTTGCATCCCGGTCCCATCACAAATAAAGAAATTGATGAGGTCAGGGTTCCTATCGCTATATTGGGAGCTGAAATTGACCATTTCCCACCAGAACAGTTGAAGCAATATGGGGAGATGCTGTCTTCGAAAGCTGAGTTTGAAAGCTTTGTGAAGATATACCCAGGTGTGGCTCATGGATGGACAGTGAGGTACGATGTTGAAGATGAATCAGCGGTCAAGAGTGCTGAAGAGGCCCATCAGGACATGTTGAATTGGTTTACCAAGCATATCAACTGCAATACCTGCGCCGTCCCTCCGAGGCTTCTCTGTTCTAACCTGATTGATAAATTTAACCAGAACCTTTTGGCCCTGAGTGGTTGTGAGTTGTGGCTCTATTCCAGAGGCTCTGAGCTTTCTTTGTCTCTCAATCTTTCTTGTCTGTCATTAAGAGTCAATTGTGACGGTCAGATACTGACTTGTGTGTTGACAATGGTGAGGGTTAGTGTCTTGAATGATGCTCTCAAGTGCATGTACAATGCTGAGAAGCGGGGGAAGCGTCAGGTCATGATTAGGCCATCCTCAAAAGTGATTATCAAGTTCCTTTTGGTTATGCAGAAGCATGGATACATTGGAGAGTTTGAATACGTTGATGACCACAGGGCTGGCAAAATTGTGGTTGAATTGAATGGAAGATTGAATAAATGTGGCGTTATTAGTCCCCGTTTTGATGTGGGTGTCAAAGAGATAGAACCTTGGACTGCAAGGCTACTTCCCTCAAGACAGTTTGGCTATATTGTCTTGACTACCTCTGCCGGTATTATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGTTGGGTTTCTTTTACTAG 1305 0.4498 MSGPLCFENPPTRSSGTNGEGTVQELGGLKTYVTGPPDSKLAILLISDVFGFEAPNLRKLADKVASEGFLVVVPDLLYGDYFDLDNPQFDRVSWKKAHATDKGCEDTKPLIAALKSKGVTAIGAAGFCWGAVVVVKLASSSDIQAAVLLHPGPITNKEIDEVRVPIAILGAEIDHFPPEQLKQYGEMLSSKAEFESFVKIYPGVAHGWTVRYDVEDESAVKSAEEAHQDMLNWFTKHINCNTCAVPPRLLCSNLIDKFNQNLLALSGCELWLYSRGSELSLSLNLSCLSLRVNCDGQILTCVLTMVRVSVLNDALKCMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2557 434 SUPERFAMILY alpha/beta-Hydrolases 28 238 IPR029058 -
Glsi12g2557 434 ProSitePatterns Ribosomal protein S8 signature. 404 421 IPR000630 GO:0003735|GO:0005840|GO:0006412
Glsi12g2557 434 Hamap 30S ribosomal protein S8 [rpsH]. 306 434 IPR000630 GO:0003735|GO:0005840|GO:0006412
Glsi12g2557 434 SUPERFAMILY Ribosomal protein S8 308 434 IPR035987 GO:0003735|GO:0005840|GO:0006412
Glsi12g2557 434 Gene3D - 374 434 - -
Glsi12g2557 434 Pfam Ribosomal protein S8 311 434 IPR000630 GO:0003735|GO:0005840|GO:0006412
Glsi12g2557 434 MobiDBLite consensus disorder prediction 1 21 - -
Glsi12g2557 434 MobiDBLite consensus disorder prediction 7 21 - -
Glsi12g2557 434 FunFam 40S ribosomal protein S15a 305 373 - -
Glsi12g2557 434 Gene3D - 305 373 - -
Glsi12g2557 434 Gene3D alpha/beta hydrolase 24 239 IPR029058 -
Glsi12g2557 434 Pfam Dienelactone hydrolase family 30 237 IPR002925 GO:0016787
Glsi12g2557 434 FunFam 40S ribosomal protein S15a 374 434 - -
Glsi12g2557 434 PANTHER DIENELACTONE HYDROLASE 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2557 Glsi-ChrGlsi12 39340449 39347520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2557 305 434 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 96.154 4.47e-88 262