Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2548 ATGGACCCTTTCTTCGCCCATCATCGTAAGCATAAGGTGGTGGTTATAATGGGTGCCACCGGCACAGGTAAGTCCAAGCTCGCCATAGACTTGGCCACCCGTTTTCCTCCGGCGGAGATTGTCAACTCCGACAAAATGCAAGTCTACAAAGGCTTAGACATCACCACCAACAAAGTAACAGACGAAGAGTGTCGTGGAGTCCCACATCATCTCCTAGGCATAGCTGATCCAAACTCCAATTTCACTGCCTCTGACTTCTGCCACCATGCCTCTTCGGCCATTGATTCCATAGTCCAGAGGGATTGCTTACCCATTATCGCTGGTGGCTCCAATTCTTACATAGAAGCCTTGGTTGAAGGCGATGCTATGTTTCGGCGAAGATACGAGTGTTGCTTCCTCTGGGTCGATGTGCCTCTGCCCGTGCTCGATTTGTTCCTGTCGAAGCGAGTTGATCGCATGATCAAAGCTGTTGACGAAGTTCGTCAGATTTTTGACCCTTTGGCCGATTACACAAGAGGAATTCGAAAGGCTATTGGCGTCCCTGAATTGGATCAGTTTCTGAGAACAGAGGTTACGGCCGACGAAAAAACCAAGAAGAGGCTTCTGGAGGTTGCCATTGCGAAGATCAAGCTGAACAACTGCTCGTTAGCTCAATGTCAGCTCCAGAAGATTCATCGGCTTCAAAGCATGTGGAAAAGAAACATGCATCGCCTTGATGCCACCGAGGTTTTCAAGAAGAGTGGGGAGGAAGCAGAGGAGGTATGGGAGAATCATGTGGTGGCGAAGAGCCAAAGGATCTTGCAGAAGTTTCTCTACGGCGAGGAGGACCAGGTGGTTCCCGCCGCCGCTATTCATCGTGTGTCTCCCAAACCCGTAATGGCTGCTGTGCCGCCGCCGACGTCGCCGCCGCAGCAGGTGGAAATGGCTGCAGCAACTCATTAG 942 0.5127 MDPFFAHHRKHKVVVIMGATGTGKSKLAIDLATRFPPAEIVNSDKMQVYKGLDITTNKVTDEECRGVPHHLLGIADPNSNFTASDFCHHASSAIDSIVQRDCLPIIAGGSNSYIEALVEGDAMFRRRYECCFLWVDVPLPVLDLFLSKRVDRMIKAVDEVRQIFDPLADYTRGIRKAIGVPELDQFLRTEVTADEKTKKRLLEVAIAKIKLNNCSLAQCQLQKIHRLQSMWKRNMHRLDATEVFKKSGEEAEEVWENHVVAKSQRILQKFLYGEEDQVVPAAAIHRVSPKPVMAAVPPPTSPPQQVEMAAATH 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2548 313 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 10 271 IPR039657 -
Glsi12g2548 313 Pfam IPP transferase 126 222 - -
Glsi12g2548 313 Pfam IPP transferase 47 120 - -
Glsi12g2548 313 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 139 235 - -
Glsi12g2548 313 Gene3D - 10 271 IPR027417 -
Glsi12g2548 313 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 122 IPR027417 -
Glsi12g2548 313 FunFam Adenylate isopentenyltransferase 5, chloroplastic 139 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2548 Glsi-ChrGlsi12 39272737 39273678 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2548 127 274 C2H2 Transcription Factor Family AT2G27760 34.270 4.23e-21 91.3