Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2546 ATGAATATTTTTTCGCTCTCTGTCTGCAAACAAGTACAAGTGCAGCCCCTGGTGAATTTCCAAAGGGGACTCAGCATGGACCCTTTCTTCCCCCATCATCGTAAGGATAAGGTGGTGGTTATAATGGGCGCCACCGGCACAGGTAAGTCCAACCTAGCCATAGACTTGGCCACCCGTTTTCCTCCGGCGGAGATTGTCAACTCCGACAAAATGCAAGTCTACAAAGGCTTAGACATCACCACCAATAAAGTAACAGACGAAGAGTGTCGTGGAGTCCCACATCATCTCCTAGGCATAGCTGATCCAAACTCCAATTTCACTGCCTCTGACTTCTGCTACCATGCCTCTTCGGCCATTGATTCCATAGTCCAGAGGGATTGCTTACCCATTATCGCTGGTGGTTCCAATTCTTACATAGAAGCCTTGGTTGAAGACGATGCAGAGTTTCGGCTAAGATACGAGTGTTGCTTCCTCTGGGTAGATGTGCTTCTGCCTGTGCTCGATTTGTTCCTGTCGAAGCGAGTTGATCGCATGATCAAAGCTGGGCAGGTTGATGAAGTTCGTCAGATTTTTGACCCTTTGGCCGATTACACGAGAGGAATTCGAAAGGCTATTGGCGTCCCTGAATTGGATCAGTTTCTGAGAACAGAGGTTACGGCCGACGAAAAAACCAAGAAGAGGTTTCTGGAGGTTGCCATTGCTAAGATCAAGCTGAACAACTGCTTGTTAGCTCAACGTCAGCAACAGAAGATTCATCGGCTTCAAAGCATGTGGAAAAGAAACATGCATCGCCTTGATGCCACCGAGGTTTTCAAGAAGAGTGGGGAGGAAGCAGAGGAGGTATGGGAGAATCATGTTGTGGCGAAGAGCCAAAGGATCTTGCAGAAGTTTCTCTACGGCGATGAGGACCAGGTGGTTCCCGCCGCCGCTATTCATCGTGTGTCTCCCAAACCCGTAATGGCTGCTGTGCAGCCGCCGACTTCGCCACCGCAGCAGGTAGCAATGGCTGCAGCAACTCATTAG 1023 0.4956 MNIFSLSVCKQVQVQPLVNFQRGLSMDPFFPHHRKDKVVVIMGATGTGKSNLAIDLATRFPPAEIVNSDKMQVYKGLDITTNKVTDEECRGVPHHLLGIADPNSNFTASDFCYHASSAIDSIVQRDCLPIIAGGSNSYIEALVEDDAEFRLRYECCFLWVDVLLPVLDLFLSKRVDRMIKAGQVDEVRQIFDPLADYTRGIRKAIGVPELDQFLRTEVTADEKTKKRFLEVAIAKIKLNNCLLAQRQQQKIHRLQSMWKRNMHRLDATEVFKKSGEEAEEVWENHVVAKSQRILQKFLYGDEDQVVPAAAIHRVSPKPVMAAVQPPTSPPQQVAMAAATH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2546 340 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 35 298 IPR039657 -
Glsi12g2546 340 FunFam Adenylate isopentenyltransferase 5, chloroplastic 164 262 - -
Glsi12g2546 340 Gene3D - 35 298 IPR027417 -
Glsi12g2546 340 Pfam IPP transferase 151 249 - -
Glsi12g2546 340 Pfam IPP transferase 72 145 - -
Glsi12g2546 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 169 IPR027417 -
Glsi12g2546 340 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 164 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2546 Glsi-ChrGlsi12 39233953 39234975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2546 152 298 C2H2 Transcription Factor Family AT2G27760 35.429 1.88e-22 95.9