Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2541 ATGGGAAATTTTTGGAGTAGCAGAAGAAGAAACAATTATTTTCAGTACCCGCCTCCACCTCCACCTCCCCCTCATCTCCCTTCTCCTTACTATTATTCTGCAGAATCCCATCCTCCTCTTCCCCCACCGCCTCCGCCGCAAGGCTATATTTTTACCCCAGCCACCTCTTATACTCCACCCAGCACTAGTTATGTCACTCCCCCTCCTCTGCCTGCACAACCGCCGCCGCCTCCTCCTCCTCATACCCATTCCTTCTATAGCTCAAATGGGTACAGCAATTATGGCAATTCTATGACCGGTCGGTTTCATTATCACCCCTTTTATGTGAATCAGCCTAGTGGGTGGCCTGCAATTCGTCCTCCTGTTGTTCCTGCCGATCCCCCACCGCCCTATGTCGACCATCAAACCGCTAAGAAGGTCAGGAATGATGTCAATGTGCATAAAGATACTTTGCGGCTAGAGGTCGACGAGCACAATCCTGACCATCACTTGGTTTCATTCGTTTTCGATGCTTTATATGATGGGAGCATTACTGTCTTCTACTTTGCCAAGGAAGAAGAAACGTGCAAGTTTATTCCACTGTATCCTGAAGCATTTGAGCCTGTCAAAATCCCCTTTCAGAAAGGAGCTGGCCAAAAATTTTGTCAGCCTTCAGGAACTGGCATTGACTTAGGCTTCTTTGAGTTGGACGATCTCTCAAAACCCTCACAAGAAGAGGTCTTTCCCCTTGTAATATGTGCTGAAACATTTTTGAGAACTCCTTCAGCAAATGAAAATCTCGGTGATTCCATGCCAGATGTATCCCCTCACATGCAGATAACTCAAGCTGTTATAGAGAAAAGTGGCAGTAGTGGTTCTTTCCAGGTAAAAGTAGTTAGGCAGATTTTGTGGATTGATGGAGTCCGTTATGAATTAAGAGAGTTATATGGAATAGGAAGCTCAGCAACAGCAGATTTTACTGACAATGATCCTGGGAAGGAGGAGTGTGTAATATGCATGACTGAACCAAAGGACACTGCTGTCTTACCCTGTCGACATATGTGTATGTGCAGTGAGTGTGCCAAAGCTTTGAGGCTTCAATCAAACAAGTGCCCTATATGCCGTCAATCTATTGAGGAGCTTATGGAGATCAAGATAAATAATAGCAACCAATGA 1155 0.4545 MGNFWSSRRRNNYFQYPPPPPPPPHLPSPYYYSAESHPPLPPPPPPQGYIFTPATSYTPPSTSYVTPPPLPAQPPPPPPPHTHSFYSSNGYSNYGNSMTGRFHYHPFYVNQPSGWPAIRPPVVPADPPPPYVDHQTAKKVRNDVNVHKDTLRLEVDEHNPDHHLVSFVFDALYDGSITVFYFAKEEETCKFIPLYPEAFEPVKIPFQKGAGQKFCQPSGTGIDLGFFELDDLSKPSQEEVFPLVICAETFLRTPSANENLGDSMPDVSPHMQITQAVIEKSGSSGSFQVKVVRQILWIDGVRYELRELYGIGSSATADFTDNDPGKEECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELMEIKINNSNQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2541 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 383 IPR013083 -
Glsi12g2541 384 PANTHER MAHOGUNIN 1 379 IPR045194 GO:0061630
Glsi12g2541 384 MobiDBLite consensus disorder prediction 1 85 - -
Glsi12g2541 384 ProSiteProfiles Zinc finger RING-type profile. 329 368 IPR001841 -
Glsi12g2541 384 MobiDBLite consensus disorder prediction 14 50 - -
Glsi12g2541 384 MobiDBLite consensus disorder prediction 62 83 - -
Glsi12g2541 384 Pfam Zinc finger, C3HC4 type (RING finger) 326 373 - -
Glsi12g2541 384 SMART ring_2 329 367 IPR001841 -
Glsi12g2541 384 CDD mRING-HC-C3HC5_MGRN1-like 328 368 IPR045195 -
Glsi12g2541 384 FunFam probable E3 ubiquitin-protein ligase LOG2 312 378 - -
Glsi12g2541 384 SUPERFAMILY RING/U-box 328 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2541 Glsi-ChrGlsi12 39184262 39189721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2541 41 384 C3H Transcription Factor Family AT3G06140 52.113 1.13e-109 324