Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2538 ATGTCTCACATAGCTGTCGAGAGGAACAGGAGAAGACAGATGAATGAACACCTCAAAGTTTTAAGGTCCTTGACCCCTTGTTTCTATATCAAAAGGGGAGACCAAGCATCTATAATAGGGGGTGTAATAGAATTCATCAAGGAGTTACACCAAGTTCTTCAAGCTTTGGAGTCCAAGAAAAGAAGAAAGAGTCTAAGCCCTAGCTCTCCTAACCCTAGTCCAACAACACTGCAGCCACAATTGTTTCATAGCCCCTTTGGAATGATTGGTGGGCCTACTGATTCGTTTAAGGAACTTGAGGCAAGCTGCAACTCTTCAGTTGCAGATGTGGAAGTGAAAATCTGTGGGTCAAACGTGATATTGAAAGTGATTTCCCACAGAATTCTAGGTCAGGTATCCAAGATAATCAGTGTTCTGGAAAGACTTTCTTTTGAGGTCCTTCATCTCAACATCAGTAGCATGGAGGATACAGTTCTGTACCACTTTGTTGTTAAGATAGGGCTGGAATGTGAACTAAGTCTGGAGGAACTAGCAATGGAAGTGCAAAAAAGCTTCTGCTCAAATGCTTTTAGCACTACGGAGAAGTAG 588 0.4235 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESKKRRKSLSPSSPNPSPTTLQPQLFHSPFGMIGGPTDSFKELEASCNSSVADVEVKICGSNVILKVISHRILGQVSKIISVLERLSFEVLHLNISSMEDTVLYHFVVKIGLECELSLEELAMEVQKSFCSNAFSTTEK 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2538 195 CDD bHLH_AtFAMA_like 1 63 - -
Glsi12g2538 195 Gene3D - 1 64 IPR036638 GO:0046983
Glsi12g2538 195 SMART finulus 4 55 IPR011598 GO:0046983
Glsi12g2538 195 FunFam Transcription factor MUTE 1 66 - -
Glsi12g2538 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Glsi12g2538 195 PANTHER TRANSCRIPTION FACTOR FAMA 1 185 IPR044283 GO:0003700|GO:0010052
Glsi12g2538 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 72 IPR036638 GO:0046983
Glsi12g2538 195 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2538 Glsi-ChrGlsi12 39162310 39163840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2538 1 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 70.256 1.79e-89 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi12g2538 HLH 4.6e-08 No_clan