Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2537 ATGGATCAATTTGATGAATCCATGAAGAAACAAATAGCAGCACTCTGGCGGGTTATCAGTGTAGCTAAATACTATAAACAGGATAATACTCCTTGCGAAATCAAAGAGGGTCTCTTTCTGGGTTCTGTTGGCGCTGCAACTAACAAGGATGCACTTAAAAATTTGAATGTTACTCATATTTTAACTGTGGCTAGTACTCTGGTGCCCGCGCATCCAAACGATTTTGTCTATAAAGTTATAGATGTTGTTGACAGAGAAGACACCAACTTAAAGCAGTACTTCAACGATTGTTTTGACTTTATTAATGAAGCCAAAAGACTTGGTGGAGGCGTTTTGGTTCATTGCTTTGCTGGAAAATCCAGGAGTGTGACTATAGTGGTCGCATATCTGATGAAGACTCATGGAATGAGCTTATCTCAAGCTCTAGCGCATGTGAAGAGCAGACGACCATTGGCATCTCCGAATCCTGGTTTCATTCGACAGCTGGAGGACTACGAAAAATCTCTTCAAGCAAATTGA 519 0.4085 MDQFDESMKKQIAALWRVISVAKYYKQDNTPCEIKEGLFLGSVGAATNKDALKNLNVTHILTVASTLVPAHPNDFVYKVIDVVDREDTNLKQYFNDCFDFINEAKRLGGGVLVHCFAGKSRSVTIVVAYLMKTHGMSLSQALAHVKSRRPLASPNPGFIRQLEDYEKSLQAN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2537 172 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 28 169 - -
Glsi12g2537 172 CDD DSP 31 164 - -
Glsi12g2537 172 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 92 150 IPR000387 GO:0016311|GO:0016791
Glsi12g2537 172 FunFam Dual specificity phosphatase 12 32 172 - -
Glsi12g2537 172 Gene3D Protein tyrosine phosphatase superfamily 32 172 IPR029021 -
Glsi12g2537 172 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 171 IPR020422 GO:0006470|GO:0008138
Glsi12g2537 172 SMART dsp_5 30 168 IPR020422 GO:0006470|GO:0008138
Glsi12g2537 172 Pfam Dual specificity phosphatase, catalytic domain 38 167 IPR000340 GO:0008138|GO:0016311
Glsi12g2537 172 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 27 170 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2537 Glsi-ChrGlsi12 39157781 39159973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2537 33 172 Protein tyrosine phosphatase (PTP) family AT3G06110 63.571 5.71e-65 195