Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2522 ATGGATAATTTCACCTCGTCCTCTTCTTCGTTTGCTCCTCCTCCTACTTCTCTATTAGACATTCTACCCACTTCAGCTCCATCGTATTCTGCAGCTTTTGACGACGGTTACGAGGACTCCTGCAGTATTTGTCTGGAGCCTTTCAGCACCGATGACCCAGCTACTATAACCAGTTGCAAACATGAATATCATCTGCATTGTATTCTTGAATGGTCTCAGAGAAGCAAAGAGTGCCCAGTATGTTGGCAGTTACTTGTCTTGAAAGACCCTGCCAGGTATATATTTTCTCTTGGAAAACTTGTCTCTCTCTTTGATACAGGCCTTTTGTTGGTACTTGTTATGGTTTATGATCTCCCTCAATCACCTACTTCTTGTAGCCAAGAACTTCTAGCTGCAGTGGAGGCTGAAAAACGCTTAAGACCAAGAAACTTAAATTCATCTGCATTCCCTAATTCTCTTAACCCCCTTGAACAGCTTAATGCTGAACATGACGATTCTTGTTCAGATGACTCTGATTTTGATGAACAAATGATGCAGCACCTAGTTGCTGCTTCAAGTACAGCTCCTTATGTTTTCAGAAGGGAAAGGCGGAGATCATCTGGAGCAGGTCCATCTGAGGTTCTTGTTTTTGACTCTTCTGTGCATGTGTCTGGGGTACAAGTACAGCCAGTGTTTACAACTTCACCATCTGGAGGTAGTTCATCAACAGCTGGCATAACGTCTGCTGCTGACATTCAACATCCAGCGTCGGCTCCTCCTTTTGTTGATGTGGTTGCAAGAAATTCTACTCCTGTAACTGATGTCCCTTTCAAATCCAGAGTTCTTTATAGCCAGCCACCATCCGAGACTGTGAGGAGACTGAACACTTCTGAGATGTTCTCCTTTCCCGAGTCCATCAAATCCAAATTTTCTGCTGCTTCATCCAGATATAAGGAATCTATTTCAAAAAGTACGCGTGGCCTTAAAGAAAAGTTAATTGCTCGTAATGCTTCTGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCTGGCATCGCTGGTGTTGCACGGATGATTGAACGCCTTGATCTTGCCTCAAAACGAACCACTGCTTCTCCTCCCCTGCCCAGCTTTACCAGAGGAACTTCCAGCATTCCGTTAAAAGGAAAGACTGTCCAAGAAAATGGGGGAGAGACTCTTCACTTTCCTGTTCAAAAAAATGGTATTGAGCATTCTCCTAGTGAATATAGCAGAGTTGCAATTCATGATGTTAGTTCAGATGCGCCCCCACCGGTTTCGAGCACAGTTGTTGGTAGAGTAGAAGTTACTCATCCATGCGATCAGAGCGGACATGATGCAGTGAAGACTTAA 1356 0.4403 MDNFTSSSSSFAPPPTSLLDILPTSAPSYSAAFDDGYEDSCSICLEPFSTDDPATITSCKHEYHLHCILEWSQRSKECPVCWQLLVLKDPARYIFSLGKLVSLFDTGLLLVLVMVYDLPQSPTSCSQELLAAVEAEKRLRPRNLNSSAFPNSLNPLEQLNAEHDDSCSDDSDFDEQMMQHLVAASSTAPYVFRRERRRSSGAGPSEVLVFDSSVHVSGVQVQPVFTTSPSGGSSSTAGITSAADIQHPASAPPFVDVVARNSTPVTDVPFKSRVLYSQPPSETVRRLNTSEMFSFPESIKSKFSAASSRYKESISKSTRGLKEKLIARNASVKELSKGVQREMNAGIAGVARMIERLDLASKRTTASPPLPSFTRGTSSIPLKGKTVQENGGETLHFPVQKNGIEHSPSEYSRVAIHDVSSDAPPPVSSTVVGRVEVTHPCDQSGHDAVKT 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2522 451 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 9 90 - -
Glsi12g2522 451 FunFam E3 ubiquitin-protein ligase RHF1A 26 93 - -
Glsi12g2522 451 SUPERFAMILY RING/U-box 37 89 - -
Glsi12g2522 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 87 IPR013083 -
Glsi12g2522 451 SMART ring_2 41 81 IPR001841 -
Glsi12g2522 451 Pfam Ring finger domain 39 81 IPR001841 -
Glsi12g2522 451 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2522 Glsi-ChrGlsi12 39063847 39066877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2522 39 89 C3H Transcription Factor Family AT4G23450 50.980 1.02e-12 63.9