Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2521 ATGGATGCTCTTTCGCCTGCACAGCTTCTTCTTCTTTCTCCCGTCCTTTCCTATGAGAAATCAACTTTTATTTGTTTTCTTTCTTCTTCACAAAGCCATAACCTTAGATTCTTCTCCTCCGTTAACCGCACCAACCCTGCTCTCTGCCTTATCTCCAAGTTCGGAACTCCCCAAGCCCTTCTAAATCCTTCTTCCGTAACCCACGAAGCAGTTGATAATGTTAGCTCCCCCACGTTAAGAGAAATATGCGAAGCTCATGTTCCCCGGCATATATTGGACAGGATGGAAGAGATTGGATATGTCATGCCTACAGATGTCCAGAGGCAAGCATTGCCTTCTCTTTTTTCTGGTGGTGATTGCATACTTCATGCCCAGACAGGTTCTGGGAAGACACTCACATACCTGCTTCTGATCTATTCTGTCATAAACACCACAAAGTCTGCTGTGCAAGCTCTTGTTGTGGTGCCCACACGTGAACTCGGCATGCAAGTCACTAAAGTTGCTCGGATCCTGGCGGCAAGGCCAATGGAGGTTGAGGGGGAGCAGAAGTCATGTACCATCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAACCTCCAATGATAGTGGTGGCAACAGTGGGGAGTTTGTGCCAAATGCTTGAAAGACAAGTGTTTAAGCTTGAAACTGTGCGTGTACTGGTGGTTGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCTCTTCGAAAGCTTTTGAGTTCATATTCATCATCCAATAACCGTCAAACAGTTTTTGCCAGTGCATCTATACCACAGCACAGACGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGATGTGGTTCATATTCATGTCAGTCCAGTTGAGCCCATGCCATCACGTCTTCATCATAGATTTATAGTATGTCATAGCAAAAAGAAACAACAAACCCTGTTGTCTTTGATACAATCTGATGCACCGGAGTCTGGCATTATATTTGTCAGTGAGCAGTCTGAAAAGTCAAAAAAGGCTGGAAATGCTCCATCAACATCCCTTCTGATTGACTTTCTGAAGACTTCGTATCAAGGTTCTTTAGATATCCTCCTTCTTGAGGAAGATATGAATTTCAATTCACGAGCAGCTTCACTTTTGGAGGTTAGGAAAGGAGGAGGGTATCTTCTTGTAGCAACAGATATAGCTGCCAGAGGAGTTGACCTTCCAGAAATGTCTCACATATACAACTTTGATCTGCCTAGGACTGCCATTGATTATCTTCATCGGGCAGGGAGAACTTGTAGGAAACCCTTTTCTGACATGAAATGTACTGTTACCAGTATTATAGTTTCAGAGGAGCGGTTTGTTCTCCAGAAATATGAAAATGAGTTGATGTTCAACTGTGATGAGATTACTTCATAA 1440 0.4306 MDALSPAQLLLLSPVLSYEKSTFICFLSSSQSHNLRFFSSVNRTNPALCLISKFGTPQALLNPSSVTHEAVDNVSSPTLREICEAHVPRHILDRMEEIGYVMPTDVQRQALPSLFSGGDCILHAQTGSGKTLTYLLLIYSVINTTKSAVQALVVVPTRELGMQVTKVARILAARPMEVEGEQKSCTIMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCQMLERQVFKLETVRVLVVDEVDFIFNSSKQVSSLRKLLSSYSSSNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHIHVSPVEPMPSRLHHRFIVCHSKKKQQTLLSLIQSDAPESGIIFVSEQSEKSKKAGNAPSTSLLIDFLKTSYQGSLDILLLEEDMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDMKCTVTSIIVSEERFVLQKYENELMFNCDEITS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2521 479 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 80 470 - -
Glsi12g2521 479 CDD DEADc 91 286 - -
Glsi12g2521 479 Gene3D - 306 477 IPR027417 -
Glsi12g2521 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 445 IPR027417 -
Glsi12g2521 479 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 293 IPR014001 -
Glsi12g2521 479 SMART ultradead3 99 313 IPR014001 -
Glsi12g2521 479 Gene3D - 58 290 IPR027417 -
Glsi12g2521 479 SMART helicmild6 359 443 IPR001650 -
Glsi12g2521 479 Pfam Helicase conserved C-terminal domain 322 441 IPR001650 -
Glsi12g2521 479 CDD SF2_C_DEAD 310 441 - -
Glsi12g2521 479 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 479 IPR001650 -
Glsi12g2521 479 Pfam DEAD/DEAH box helicase 104 277 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2521 Glsi-ChrGlsi12 39053828 39060117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2521 99 462 Eukaryotic Initiation Factors Gene Family AT3G13920 27.614 7.91e-29 116