LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g2517	ATGCAAGAATTCCTGGGTTCAGTTCGCCGATCCTTGGTTTTCAAAAGCCCAGGTGGGGACGATGGAGGGTTTGGTGTTGGCGGCCTGGTTGATAAGATTGGATCCAGCATTCGCAAATCACGAATTGGGCTCTTTTCTCAACCACGGGTCAGGGCTCTGCCGCCGGTTCCCAAGGACAACGCGCCTTCGATCCGATGGCGGAAGGGTGAGTTGATTGGTTGTGGTGCCTTTGGTCGGGTCTATATGGGAATGAACCTTGATTCTGGGGAGCTTATTGCTGTCAAGCAGGTTTTAATTGCGGCAAGTAGCGCTTCGAAAGAGAAAACACAGGCTCATATTTGGGAGCTCGAAGAGGAAGTGAAGCTTCTGAAGAATCTTAAACATCCAAATATTGTTAGATACTTGGGAACTGCTAGAGAGAAGGACTCCTTGAATATTCTGCTGGAATTTGTACCCGGTGGATCTATCTCATCACTCTTGGGGAAATTTGGATCCTTCCCTGAGTCTGTTATAAAAATGTATACGAAACAACTCTTACTGGGCCTTGAATACCTTCACAAGAATGGAATTATTCACAGGGATATTAAGGGTGCAAACATTCTTGTTGATAATAAAGGATGCATTAAACTTGCAGACTTTGGTGCATCCAAGAAAGTTGTTGAACTGGCTACCATAAATGGTGCGAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTGCAGACAGGACATAGCTTCTCTGCTGATATTTGGAGTGTTGGATGCACTGTGATAGAGATGGCCACAGGGAAGCCTCCATGGAGCCAACAATATCAGGAGGTTGCTGCCCTTTTCCATATTGGGACAACTAAATCTCATCCGCCCATACCTGAACACCTTTCTGTGGAGGCAAAGGATTTTTTGTTGAAATGCTTACAGAACATCCATTTGTCACCTGTGAGTATCAGGAACTTAATTGTATATCATGCAGTTCAATTGTGTTTGGATTCTACCAGTGGAGCAACCTGCACAGGCCTTGAGGATGTCTGTCAGATGGATAGCTTAAAATGCTCAACTATGTATCCTGAAACTTTTCTAAACTCAGTTTCCTACCAAGGAGCAAGCAGGTATGACGATGACATGTGTCAGATAGATGATAAAGATGATCTTTTTGTTGGTGCATCAGATGATGTGAAGAGTTTCAATCCTATGTGTGAACCTATGGATGACTGGCCTTGCAAGTTTGATGAAAATCTAGATTTGGAGAAAAGAAGATCCAACTTGTCTCTTGATCAGACTATTAGTAAGAGTCTGAGAAGCTCTAAAGCATCTCTAAAGGTGGAGAATGACTTTTCATTTCCAAGTGAGCCTTTAGGAGCCGATGATGATGATGAAGTCACTGAGTCAAAAATTAGAGATTTCCTCGATGAAAAGGCTTTCGAACTGAAGAAACTCCAAACTCCTCTTTATGAAGAATTTTTTAGCATATCGAATGCAATTGTTTCTCCAGCACCTATTTCAATTGCACACAGTGAAGTTGTTTCAAATGTCTCAAATGAAACACCAAAAAGTAGGTCACCAAGTCAGGCTAGCAGACGATTCTTCGTGGCTGATGTTTCCACTGTTGTGAGGCATGGGAGTCATATCAAAAATCAATCAAAAGTTAGTGGTGCACACAATAGACCTTTGCAAGAAATCCATCCATCTGAGCTTAATGAATGGAAAGAGACTATTCATGATGCTCAGCAAGAATCATTTAGTGCTAGGTGTGTATCTACTGTTTGA	1776	0.424	MQEFLGSVRRSLVFKSPGGDDGGFGVGGLVDKIGSSIRKSRIGLFSQPRVRALPPVPKDNAPSIRWRKGELIGCGAFGRVYMGMNLDSGELIAVKQVLIAASSASKEKTQAHIWELEEEVKLLKNLKHPNIVRYLGTAREKDSLNILLEFVPGGSISSLLGKFGSFPESVIKMYTKQLLLGLEYLHKNGIIHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEHLSVEAKDFLLKCLQNIHLSPVSIRNLIVYHAVQLCLDSTSGATCTGLEDVCQMDSLKCSTMYPETFLNSVSYQGASRYDDDMCQIDDKDDLFVGASDDVKSFNPMCEPMDDWPCKFDENLDLEKRRSNLSLDQTISKSLRSSKASLKVENDFSFPSEPLGADDDDEVTESKIRDFLDEKAFELKKLQTPLYEEFFSISNAIVSPAPISIAHSEVVSNVSNETPKSRSPSQASRRFFVADVSTVVRHGSHIKNQSKVSGAHNRPLQEIHPSELNEWKETIHDAQQESFSARCVSTV	591

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g2517	591	ProSitePatterns	Protein kinases ATP-binding region signature.	72	95	IPR017441	GO:0005524
	Glsi12g2517	591	Coils	Coil	106	126	-	-
	Glsi12g2517	591	SMART	serkin_6	66	325	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g2517	591	SUPERFAMILY	Protein kinase-like (PK-like)	65	311	IPR011009	-
	Glsi12g2517	591	CDD	STKc_MAPKKK	65	310	-	-
	Glsi12g2517	591	FunFam	Serine/threonine-protein kinase STE11	62	156	-	-
	Glsi12g2517	591	Pfam	Protein kinase domain	67	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g2517	591	FunFam	Mitogen-activated protein kinase kinase kinase 2	65	355	-	-
	Glsi12g2517	591	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468
	Glsi12g2517	591	ProSiteProfiles	Protein kinase domain profile.	66	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g2517	591	Gene3D	Transferase(Phosphotransferase) domain 1	65	339	-	-
	Glsi12g2517	591	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	61	311	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g2517	Glsi-ChrGlsi12	39033503	39038628	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g2517	1	561	MAP Kinase Kinase Kinase	AT3G06030	56.814	0.0	622

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Glsi12g2517		Pkinase	9.6e-66	CL0016