Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2512 ATGGTCATGGCTCAGCTGCAGAGCCAACAGCAGCAGCAGCCACCCATCGACCATGCCCAGAAGACCAAGACTCTCATTTGCGCCCTCAACCTTGTCTCCCGTAACCTCCCTCTGCCTCCTGACCTTTTTAACACCGTTTCTTCCATCTATCACGCCGCCGAAGATGCTGACAGCAATGGGCATGAGTGCGAGGTCCGTGATGGGAGTGGCCATTCTGGCGGATCCGAAGAGAAACAGGTGGATGCTACCGCCGACAAGGGTTTGGATGATCAAGGGAATTCTAGGGAAGATTTATTAACAGATCTTGAAGATGCACTATTGAAACAACGACCGAACTGTGTGTCAGGTTACAAATTGAAGGAAGAAAGGGAAAACCGTTATCAAAGTCGAATTCAGCATCGGTTAAATGACCTTGAAGAATTGCCTTCAAGCAAGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTATATGGACTAAAGTTAGCGGAGTTGCAGAGGAAGGTTCGGTCTGATGTGAGTTTTGAATACTGGCTCAAAGTTAAATGTGCATATCCTGACAGGCAATTGTTTGATTGGGGAATGATGCGGTTGCGTCGTCCAATGTATGGTGTTGGAGATCCATTTTCCATGGATGCTGATGACCAGTTAAGGAAGAAACGGGATGCAGAGAGATTGTCAAAATTAGAAGAGGAGGAAAAGAATCATATAGAAACCAGAAAAAGAAAATTTTTTGCTGAAATACTCAATGCTGTTCGTGAGTTCCAGTTACAAATTCAAGCTTCTTTGAAACGGAGAAAACAAAGAAATGATGGTGTCCAGGCATGGCATGGAAGGCAACGACAACGTGCAACACGGGCTGAGAAATTGAGGTTCCAAGCCTTAAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTGGGAGCAGCTGTTCAACGTCAAAAAGACTCAAAACTATTAGATGGCATCGAACCCTTGGAAGAATCAGAAGCTGATCTACCAGATTCAGATGCTTCAAAGAATGGAATATCTAAGGAATCTCCTCTTGAGGAAGATACTGATGTAATAGATTCTGATCATAATGGTGATTCTAGTGATTTACTTGAGGGTCAGCGACAATACAACTCTGCCATACATGCAATTCAAGAAAAGGTAACAGAGCAGCCTTCTATTCTTCAAGGCGGTGAGTTAAGACCATATCAGATAGAAGGGCTTCAGTGGATGCTTTCTTTGTTTAATAACAACCTAAATGGAATTTTGGCTGATGAAATGGGGCTGGGGAAGACAATACAAACCATTTCGTTGATAGCTTATCTTATGGAGAACAAGGGTGTGACTGGCCCCCACTTGATTGTGGCTCCAAAGGCTGTTCTTCCAAATTGGATCACTGAATTCTCAACATGGGTTCCTAGCATTACAACTATTCTCTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAATTGTCGGGGGAGGGGAAGTTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAGGCATTTCTGAAGAAAATTAACTGGTTCTACTTGATTGTGGATGAAGGGCATCGGCTGAAGAATCATGAGTGTGCTCTAGCAAGAACTCTTGACTCTGGCTATAACATCCATCGCAGACTCTTGCTGACTGGCACTCCTATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCAAGCATTTTCAATTCAGTTCAAAATTTCGAGGACTGGTTTAATGCCCCCTTTGCTGACAGAGTTGATGTCTCTCTAACAGATGAAGAACAGCTATTGATCATTCGCCGACTACATCAAGTAATAAGGCCCTTTATATTAAGAAGGAAGAAGGATGAGGTGGAAAAATATCTTCCGGGGAAATCTCAGGTCATACTCAAATGTGACATGTCATCATGGCAGAAAGTATATTATCAACAAGTTACTGACTTGGGCAGAGTTGGCTTAGACAATGGTTCTGGGAAATCAAAAAGTCTACAGAACCTAACAATGCAACTTAGAAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAGAACATAATATTTGGAATAAGGATGAGATTGTCAGAGCATCAGGGAAGTTTGAACTTCTTGATCGTTTGCTCCCAAAACTTCGCAGAACTGGGCACAGAGTCCTTATGTTCTCACAAATGACTCGCCTCATGGATATTCTTGAAATTTATCTGCGACTTCATGATTTCAAGTTTCTTAGACTCGATGGCTCAACAAAAACTGAGGAAAGAGGGACTCTACTGCGGCAGTTCAATGCGCCTGACTCACCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTCTCAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGAGCTCATCGCATTGGACAAAAAAAGGAAGTGAGGGTTTTTGTGTTGGTTAGTGTGGGATCGATTGAGGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATCCAGGCTGGACTTTTTAACACAACTTCAACAGCTCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGCACAAGCTCACTTGGGACTGACGTACCAAGTGAGAGGGAAATCAACCGCCTTGCAGCTCGGTCAGATGAGGAATTTTGGTTATTTGAGAAGATGGATGAAGAAAGAAGGCTAAAGGAGAATTACAGATCCCGTCTCATGGAAGAGCATGAAGTGCCAGATTGGGTATACTCTGCACCTAATAAAGATGACAAGGTCAAAGCTTTTGATATTGGTAGTGTTACTGGGAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTACAATGGATGAAAGCTGTGGAGAATGGAGATGACATAGCAAAGATTTCAGTGAAAGGGAGAAGGAGAGACCACCTGCCATCTGACAGCAACACACTTGCTAGTGATAATGTTGGGGCAGAAGAAGGGTTATCACAGTTACAGAGTGAAAGCTTCCCCATGGCAAAAGAGAGATCAAGCGAAGATTCTTTCCATATGACCCCCCCTCCCCCAAAGAGACCGAGGCCTGAAGGAATAAATACTCAGAAACAAGAATACGAGGGCATCAGAGGAAGTGGTTTGAATGAGCACATATTTTCCTGGAATACCCATAGAAAAAAAAGATCAAGCAATCTTGCCCAGAGTTCATTATCTGATTCTAGAGGGCAGAATTCAAATGGAAGAGCAAACTGGAGTTGA 3375 0.4281 MVMAQLQSQQQQQPPIDHAQKTKTLICALNLVSRNLPLPPDLFNTVSSIYHAAEDADSNGHECEVRDGSGHSGGSEEKQVDATADKGLDDQGNSREDLLTDLEDALLKQRPNCVSGYKLKEERENRYQSRIQHRLNDLEELPSSKGEDLQTKCLLELYGLKLAELQRKVRSDVSFEYWLKVKCAYPDRQLFDWGMMRLRRPMYGVGDPFSMDADDQLRKKRDAERLSKLEEEEKNHIETRKRKFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKLLDGIEPLEESEADLPDSDASKNGISKESPLEEDTDVIDSDHNGDSSDLLEGQRQYNSAIHAIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWITEFSTWVPSITTILYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKINWFYLIVDEGHRLKNHECALARTLDSGYNIHRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYQQVTDLGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEHNIWNKDEIVRASGKFELLDRLLPKLRRTGHRVLMFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGTLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRLKENYRSRLMEEHEVPDWVYSAPNKDDKVKAFDIGSVTGKRKRKEVVYADTLSDLQWMKAVENGDDIAKISVKGRRRDHLPSDSNTLASDNVGAEEGLSQLQSESFPMAKERSSEDSFHMTPPPPKRPRPEGINTQKQEYEGIRGSGLNEHIFSWNTHRKKRSSNLAQSSLSDSRGQNSNGRANWS 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2512 1124 FunFam Probable ATP-dependent DNA helicase CHR12 650 948 - -
Glsi12g2512 1124 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 732 899 IPR001650 -
Glsi12g2512 1124 MobiDBLite consensus disorder prediction 59 94 - -
Glsi12g2512 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 896 IPR027417 -
Glsi12g2512 1124 MobiDBLite consensus disorder prediction 1022 1046 - -
Glsi12g2512 1124 Pfam Snf2-ATP coupling, chromatin remodelling complex 937 996 IPR029295 GO:0042393
Glsi12g2512 1124 MobiDBLite consensus disorder prediction 1097 1124 - -
Glsi12g2512 1124 Gene3D - 650 946 IPR027417 -
Glsi12g2512 1124 Pfam Helicase conserved C-terminal domain 729 842 IPR001650 -
Glsi12g2512 1124 SMART helicmild6 758 842 IPR001650 -
Glsi12g2512 1124 SMART SnAC_2 935 996 IPR029295 GO:0042393
Glsi12g2512 1124 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 431 597 IPR014001 -
Glsi12g2512 1124 SMART ultradead3 415 608 IPR014001 -
Glsi12g2512 1124 MobiDBLite consensus disorder prediction 349 390 - -
Glsi12g2512 1124 MobiDBLite consensus disorder prediction 366 388 - -
Glsi12g2512 1124 Pfam SNF2-related domain 422 710 IPR000330 GO:0005524|GO:0140658
Glsi12g2512 1124 Gene3D - 388 643 IPR038718 -
Glsi12g2512 1124 FunFam Chromatin structure-remodeling complex protein SYD 410 653 - -
Glsi12g2512 1124 MobiDBLite consensus disorder prediction 1013 1124 - -
Glsi12g2512 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 644 IPR027417 -
Glsi12g2512 1124 PANTHER SNF2/RAD54 HELICASE FAMILY 120 1030 - -
Glsi12g2512 1124 CDD SF2_C_SNF 720 853 - -
Glsi12g2512 1124 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2512 Glsi-ChrGlsi12 38959778 38972025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2512 401 869 RAD5 or RAD16-like Gene Family AT1G02670 26.157 5.16e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi12g2512 SNF2_N 3.2e-69 CL0023