Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2502 ATGCGCATCCTCCGTCTCTCTATCTCTCTAGTTCCATTAATCTCTGGAGACCTTTTTTTTCTTCTTCTTCTTCTTCATATGGAGTTTCAGAGGCGCCAAGAACAGAGCGTCCCTGAGAGAAAAGGCCAGAAGCGGAAGCTGGAGGAGGATTTCGAAGACGATCGAGAGATCTCGGCGCCACCGACCGGCGACGCCCGAGAGGCCCTTCTCGCGGAGGTCACGGCGCAGGTTGAAATCCTTGACTCCAATTTCTCATGGAGGGAAGCCGATCGAGCCGCGGCCAAGCGCGCCACTCACGTCCTCGCCGAGCTTGCCAAGAACGAGGAAGTAGTGAACGTGATTGTTGAAGGAGGCGCTATCCCGGCTTTAGTTAAGCATCTTCAAGCGCCGTCTTTAAGTGAAAACGATCGCGGTCAAAAGCCATTTGAACACGAGGTCGAGAAAGGGAGTGCTTTTGCTTTAGGACTTCTTGCCGTCAAGCCAGAACATCAACAACTTATTGTTGACAATGGTGCCTTAAAGCATCTTGTTGATCTGTTAAAGAGACATAAGAATTGTTCCACTTCACGTTCTGTGAATAGTGTCATTCGTAGGGCTGCAGATGCAATCACTAATCTTGCTCATGAGAACAGCAGTATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTGAGTTGCTTGAATTTATTGATACCAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATAGTTGAATGCAATGCTCTTCCAACTCTAATTTTAATGCTTCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTAATTGGAAATCTGGTACACTCTTCCCCTAATATAAAGAAAGAGGTTCTTCTTGCTGGAGCTTTACAACCTGTTATTGGATTACTTAGCTCCTCCTGCTCTGAGAGCCAAAGGGAAGCAGCATTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGTAAGGTTCACATTGTTCAGAGAGGTGCTGTCCGACCTCTGATAGAGATGCTTCAGTCCCCTGATGTACAGCTCAGGGAAATGTCTGCCTTTGCTTTGGGGAGACTGGCACAGGACACCCATAACCAAGCTGGTATTGCGCACAATGGTGGCTTAGTGCCACTACTCAAGCTCCTTGACTCCAAAAATGGGTCTTTACAACATAATGCTGCTTTTGCTCTTTACGGTCTTGCAGATAATGAGGATAATGTGTCTGATTTCATTAGGGTAGGTGGTGTTCAGAGACTGCAGGATGGAGAATTTATTGTTCAAGCAACAAAAGATTGTGTTGCGAAGACTTTAAAAAGATTAGAGGAGAAGATTCATGGTCGTGTCCTGAACCATTTGTTATATCTTATGCGAGTTTCAGAAAAGACTTTCCAAACAAGACTTGCTTTAGCTCTTGCTCATCTTTGTTCTGCTGATGATCAGAGAACCATATTCATTGATAACAATGGTTTGGAGTTGCTTATTGGGCTTCTTGGCTCTTCTAACCCTAAGCAGCAACTTGATGGTGCTGTTGCTTTATGCAAGTTGGCCAACAAAGCCATGACACTGTCTCCGATTGATGCTGCTCCCCCTTCTCCGACACCTCAGGTTTATTTGGGAGAGCAGTATGTAAACAGTGTCACATTGTCTGATGTTACCTTTTTGGTTGAAGGGAAACGGTTTTATGCTCACAGAATCTGCCTACTTGCATCTTCAGATGCATTTCGTGCGATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGATATAGAGATTCCAAATATCAGATGGGAGGTTTTTGAGCTAATGATGAGATTCATATATACTGGATCAGTTGATGTAACTCAGGATATTGCCCAAGATCTTCTCCGAGCAGCTGATCAATATCTCTTAGAAGGACTTAAGAGACTCTGTGAATACACGATAGCACAGGATATATCACTTGAGAATGTGTCAAGTATGTATGAACTTTCGGAAGCTTTCAATGCGATATCATTGAGGCACACATGCATCCTTTTTATCATGGAGCAATTTGATAAATTGAGTGCCAGACCAGGGCACTCTTATCTTGTTCAGCGTATAATACCAGAGATCCGTAATTACTTTGCTAAAGCACTCACAAAGGCTAACTCCCGTGACATCCGTCTGTAG 2196 0.4435 MRILRLSISLVPLISGDLFFLLLLLHMEFQRRQEQSVPERKGQKRKLEEDFEDDREISAPPTGDAREALLAEVTAQVEILDSNFSWREADRAAAKRATHVLAELAKNEEVVNVIVEGGAIPALVKHLQAPSLSENDRGQKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLKRHKNCSTSRSVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFIDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSSCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKTFQTRLALALAHLCSADDQRTIFIDNNGLELLIGLLGSSNPKQQLDGAVALCKLANKAMTLSPIDAAPPSPTPQVYLGEQYVNSVTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTQDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFIMEQFDKLSARPGHSYLVQRIIPEIRNYFAKALTKANSRDIRL 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2502 731 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 171 221 IPR000225 GO:0005515
Glsi12g2502 731 SUPERFAMILY ARM repeat 88 435 IPR016024 -
Glsi12g2502 731 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 430 IPR000225 GO:0005515
Glsi12g2502 731 Pfam Armadillo/beta-catenin-like repeat 336 375 IPR000225 GO:0005515
Glsi12g2502 731 Pfam Armadillo/beta-catenin-like repeat 217 249 IPR000225 GO:0005515
Glsi12g2502 731 Pfam Armadillo/beta-catenin-like repeat 161 207 IPR000225 GO:0005515
Glsi12g2502 731 Pfam Armadillo/beta-catenin-like repeat 252 291 IPR000225 GO:0005515
Glsi12g2502 731 Gene3D - 234 436 IPR011989 -
Glsi12g2502 731 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 347 389 IPR000225 GO:0005515
Glsi12g2502 731 Gene3D - 68 231 IPR011989 -
Glsi12g2502 731 SUPERFAMILY POZ domain 557 658 IPR011333 -
Glsi12g2502 731 Gene3D - 441 540 IPR011989 -
Glsi12g2502 731 CDD BTB_POZ_ARIA_plant 551 666 - -
Glsi12g2502 731 ProSiteProfiles BTB domain profile. 564 631 IPR000210 GO:0005515
Glsi12g2502 731 Gene3D Potassium Channel Kv1.1; Chain A 545 691 IPR011333 -
Glsi12g2502 731 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 221 256 IPR000225 GO:0005515
Glsi12g2502 731 Pfam BTB/POZ domain 558 659 IPR000210 GO:0005515
Glsi12g2502 731 MobiDBLite consensus disorder prediction 35 61 - -
Glsi12g2502 731 FunFam Armadillo/beta-catenin repeat family protein 555 699 - -
Glsi12g2502 731 SMART arm_5 107 159 IPR000225 GO:0005515
Glsi12g2502 731 SMART arm_5 294 334 IPR000225 GO:0005515
Glsi12g2502 731 SMART arm_5 210 250 IPR000225 GO:0005515
Glsi12g2502 731 SMART arm_5 160 208 IPR000225 GO:0005515
Glsi12g2502 731 SMART arm_5 336 376 IPR000225 GO:0005515
Glsi12g2502 731 SMART arm_5 377 417 IPR000225 GO:0005515
Glsi12g2502 731 SMART arm_5 252 292 IPR000225 GO:0005515
Glsi12g2502 731 SMART arm_5 492 532 IPR000225 GO:0005515
Glsi12g2502 731 SMART BTB_4 564 661 IPR000210 GO:0005515
Glsi12g2502 731 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 172 IPR000225 GO:0005515
Glsi12g2502 731 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 27 725 IPR044282 -
Glsi12g2502 731 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 263 305 IPR000225 GO:0005515
Glsi12g2502 731 SUPERFAMILY ARM repeat 462 639 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2502 Glsi-ChrGlsi12 38904627 38912143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2502 304 434 U-box Gene Family AT3G46510 27.820 4.10e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Glsi12g2502 BTB 5e-26 CL0033