Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2495 ATGTTGGCTAATCATTTTCAAAACGGCGTGGAAACCGCAAAGCTCGTTTGGTCGCGGATTCCGGACGCGGAGGAACCCCAGTACCTTGAAGACGCCACTGGCCTCTTGAAGAAGAGCGATGGAAACGGCGTTGAGAGTCTCGACTATGAAGTCATAGAGAATTATGCTTATCGGGAAGAACAGGCGCAGAGAGGAAAGCTTTATGTGGGCTATTTACTGGTGGTGAAATGGTTCTTTGCCTTGCTCATTGGCATTGGTACTGGACTTGCGGCTGTTTTCATCAATATTTCTGTTGAAAACTTTGCTGGATGGAAGTTCTCATTGACATTTAGTATAATTCAAAAATCATATGTGGCTGGCTTTATAGTATATGCCCTTATCAACTTGGTTTTGGTCTATTCCTCTGCATATATTATCACACAATTTGCTCCAGCTGCAGCTGGATCCGGTATTCCTGAAATCAAGGGTTACTTGAATGGAATTGATATTCATGGCATCCTTCTTTTCAGAACCTTGATTGGAAAGATATTTGGAAGTATTGGTTCAGTGGGAGGTGGCCTTGCTTTGGGCAAAGAAGGTCCTCTTGTTCATACCGGTGCATGTATTGCTTCTTTGCTCGGACAAGGTGGATCCACTAAATATCATCTAAGTTCGAGGTGGTTTCAAGTATTCAAAAGTGATCGCGACCGCCGTGACCTTGTAACCTGTGGGTGTGCAGCTGGTGTTGCTGCTGCATTTAGAGCTCCGGTTGGTGGTGTATTGTTTGCATTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTATTGTGGCGGGTCTTCTTCACTTCTGCTGTTGTGGCTGTTGTGGTGCGTACTGCAATGGGGTGGTGTAAGAGTGGAAAGTGTGGTCATTTTGGCTCCGGTGGATTCATAATATGGGATGTATCTGATGGTCAAGAAGATTATTCCTTTGCGGAGTTATTACCAATGGCTATTATTGGGGTTATTGGAGGTCTACTAGGAGCCTTGTTTAACCAGCTTACTCTTCATATTACTTCTTGGCGTAGAAATCATCTGCACAAAAAAGGTGGTCGAGTCAAGATTGTTGAAGCATGCCTTGTCTCCCTGTTAACATCAGCTATTTCATTTGGCTTACCACTTCTCAGAAAATGTAGTCCATGCCCTGAATCTGATTCTGATTCTGGTATTGAATGTCCACGACCCCCTGGGATGTATGGGAATTATGTAAATTTCTTTTGTAGCAAAGAAAAGGAATACAATGATCTTGCAACTATTTTCTTCAATACACAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATACATGAGTTCAGCGCCCAAAGTTTATTAGCCTTTTTGGTTATGTTTTATACTTTAGCAGTGGTGACGTTTGGTACTGCTGTTCCAGCTGGTCAATTTGTTCCTGGAATCATGATTGGATCGACATATGGACGTCTAGTTGGCATGTTTGTTGTAAAATATTACCGAAAGCTCCACATTGAAGAGGGAACGTATGCTCTTCTGGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTCTGTGTCATTATGGTTGAAATAACAAATAACTTAAAACTTTTACCTCTTATCATGCTTGTTCTACTTATATCGAAGGCTGTTGGTGATGCTTTTAATGAGGGTCTTTACGAAGAGCAGGCACAACAGAGGGGCATACCATTACTGGAATCAAGGCCCAAATATGTAATGCGGAATATGAAAGCAAAGGAGGCCTGTGGAAGTGGAATGGTGATCTCTTTACCTCGTATCGTTAAGGTTGCAGATGTAGTTTCTATTCTTCGGAGCAACAAACACAATGGTTATCCTGTAATTGATCACACAAGAAGTGGAGAACCACTTGTTATTGGATTAGTTCTTCGGAGTCATTTATTGGTAATTCTACAATCAAAGGTTGATTTGCAGCATAGTCCTTTACCCTCTGATCCCAGAGGTGGAACCAGGCCAATAAGACATGATTCTGGCGAATTTGCGAAGCCTGTTTCAAGTAAAGGAATATGTATAGATGATATACATCTAAGTTCAGATGACTTGGAAATGTACATAGATCTTGCCCCATTTTTGAATCCCTCTCCATATATTGTACCTGAAGATATGTCTTTGACAAAGGTGTACAACCTTTTCCGCCAACTAGGGTTGAGGCATTTATTTGTTGTTCCACGCCCATCTCGTGTGCTTGGTTTGATTACCAGAAAAGATTTGTTGATTGAGGAAACAGAAAGTGTGGATACAGTAGAGCTCCAGTCAACTAGTGTAAGAATCCGGCATCGTGACCAAAACTTGATGACAAGGACTGCAGATGTTGAGCGCCCTTTGCTAAATGGTCTTCTGGTTCAGGATTAG 2397 0.4222 MLANHFQNGVETAKLVWSRIPDAEEPQYLEDATGLLKKSDGNGVESLDYEVIENYAYREEQAQRGKLYVGYLLVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYVAGFIVYALINLVLVYSSAYIITQFAPAAAGSGIPEIKGYLNGIDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLSSRWFQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLLWRVFFTSAVVAVVVRTAMGWCKSGKCGHFGSGGFIIWDVSDGQEDYSFAELLPMAIIGVIGGLLGALFNQLTLHITSWRRNHLHKKGGRVKIVEACLVSLLTSAISFGLPLLRKCSPCPESDSDSGIECPRPPGMYGNYVNFFCSKEKEYNDLATIFFNTQDDAIRNLFSAKTIHEFSAQSLLAFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLHIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQAQQRGIPLLESRPKYVMRNMKAKEACGSGMVISLPRIVKVADVVSILRSNKHNGYPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDLQHSPLPSDPRGGTRPIRHDSGEFAKPVSSKGICIDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEETESVDTVELQSTSVRIRHRDQNLMTRTADVERPLLNGLLVQD 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2495 798 CDD ClC_6_like 45 574 - -
Glsi12g2495 798 PRINTS Chloride channel signature 523 542 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2495 798 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2495 798 PRINTS Chloride channel signature 505 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2495 798 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2495 798 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2495 798 PRINTS Chloride channel signature 470 490 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2495 798 PRINTS Chloride channel signature 561 575 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2495 798 ProSiteProfiles CBS domain profile. 706 762 IPR000644 -
Glsi12g2495 798 Gene3D Clc chloride channel 70 575 - -
Glsi12g2495 798 Pfam Voltage gated chloride channel 134 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2495 798 Pfam CBS domain 707 753 IPR000644 -
Glsi12g2495 798 FunFam Chloride channel protein 698 789 - -
Glsi12g2495 798 Gene3D - 595 759 IPR046342 -
Glsi12g2495 798 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 29 758 - -
Glsi12g2495 798 SMART cbs_1 709 757 IPR000644 -
Glsi12g2495 798 SMART cbs_1 595 647 IPR000644 -
Glsi12g2495 798 CDD CBS_pair_voltage-gated_CLC_euk_bac 596 753 - -
Glsi12g2495 798 FunFam Chloride channel ClC3 68 385 - -
Glsi12g2495 798 SUPERFAMILY CBS-domain pair 579 753 IPR046342 -
Glsi12g2495 798 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g2495 798 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g2495 798 PRINTS Plant CLC chloride channel signature 422 438 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g2495 798 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g2495 798 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g2495 798 SUPERFAMILY Clc chloride channel 54 576 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2495 Glsi-ChrGlsi12 38842026 38850636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2495 1 771 Ion Channels AT5G26240 84.974 0.0 1267