Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2482 ATGGCTTTTTCTGTATTCCTGCCTTTTATTCTTGCACTAGCTTTATTCCTGAATGGCTTACATGCCCAGAATTCTTCCTCGGGAATAAATTTGAATTCCGGCATCACTGCTGGATCAAATTCTACTTTGAAATCTCCCTCTGGTGATTTTGAATTCGGATTCCACTCTCTTCCCTCTGGTCTCTATCTGCTTGCAATATGGTTCGGGAAAATCCCAGAGAGAACCTTAGTTTGGTATCGGAATCCCCCTGTGGAAGCAAATTCCTTAATCCAACTCAATTCTCAAGGCCACCTTGTGCTGACATACCCAAATAGAACCATTGCTCAAACAATAGACAATGGAGACAGTGCAAGTTCCGTGTTCATGCAAGATGATGGCAACTTTGTAATGAAAGACGCCAACTCGATATTTGTGTGGCAGAGCTTTGATTTTCCATCTAACACAATGTTACCAGGGCAAGTCTTGAAGGAAAACCAAATGCTCTATTCCAAGGGGAAAGGAGCTCTGAACTACTCAAACGGAAATTTCAGGGTGTTAATGCAAAATGATGGAAACTTGTTACTCTCCGCTTACCAGTGGTCGGATCCTGCTTATTGGTACTCTGCTACAACAGAATTCAGCAATGTGAGTTTGGTGTTTAATACTAGCGCTTTCCTGTATCTTACCAATGGCACCAACAACATATACACTCTAACAAACAACCCTCCTCCAACCCCAGTTGGAGATTACTATCACCGAGCAACTATGGATGAAAATGGCAACTTCCAACAATATTCTTATCACAAAAGAAACGGCAGCAGGTGGATAAGGGTGTGGAGAGCCATTAATGACTCCTGCAGAGTGGATGCGGTTTGTGGGTTAAATGGCTTGTGCTCTTCACCTGATAATGAATCAGTGAAGTGCGACTGCCTTCCAGGTTTTATACCATTTGAACCTAGAGACGTGTCTTTAGGATGTCACCCAGCAACCGTGATTAATTATTGTGCAGAGCCTTCCCTGTTAAACTTCAAGCTGGAGGTGCTTAATGATACTGATTTCCAATTTGATTCTATTTCAGACTTTTCTTCTGCATATAATGTTGATTTGGAAGGTTGCAAGAAGTTTATCATGGATGATTGTTATGTCACTGCTGCTACCTTCAATGCTACATCTTTCACATGTACCAAAAAGAGGACGCCACTGGTGAATGCCAGAAAGAGTTCATCTTCAAAGGGACTAAAGGCACTGCTCAAAGTCCCCAACAGTCATGATTCTGCCACATCAAAAGTTTCTAAAAAGAAGAGTTTTAATGTCAGAGTTTTTCTGGAGGTTATGCTTGCAATTAGTGCCACCTTTGCTTGCCTGTTTGGAGCCCTTGCTGTCTACTATCATCCTTTATCTCATAGGCTAATGAGAAGAAGAAAATCTCTGGATGCAAGCGCCATCGGAATCAACTTCAGAGAATTCACGTTTCGGGAGCTTCATGAAGCAACATTTGGATTTAGTAAGATTATTGGGAAGGGATCTTCAGGCAAAGTCTACAGTGGAAATCTAATCATAGATGATGCAGAAGTTGCTATTGCAGTGAAGAAGCTGGAGAAGAAGATTGAAAGAAGTGAAAAGGAATTCATGACTGAGCTCAAGATAATTGGCCGCACCCATCACAGAAGCCTGGTGAGACTATTGGGCTTTTGCATTGAGAAAAGTCATAGACTTCTTGTCTATGAGTTGATGCCAAATGGAGCACTGTCCAATTTCTTGTTTGGACAGCGAGAAAAACCTCAATGGGGTCAGAGGATTGAAATGGCTTTAGGAATTGCAAGGGGCTTACTTTACCTGCATGAAGAGTGTGAGACCCAGATCATACATTGTGATATCAAGCCCCAGAATGTGTTGCTTGATGCCAATTGTAAAGCAAAGATTGCAGATTTTGGGCTTTCGAAGCTTCTGAACAAAGAGCAAACTAGAACGAACACTAACTTCAGAGGAACAATAGGGTACATAGCACCTGAATGGCTGAGGAGTGCGCCAATAACTGCTAAAGTTGATGTGTTTAGCTTTGGGGTTATGTTGCTTGAGATTATATGCTGCAGAAGGCATGTAGAATCGAGTCAAGATGAGGGAGAAAGTGAAGAGGATGATTCACTTCTTGCAAAATGGATTCTAAGGTGTATGATATCTAAGAAACTAGAGGTGGTGGTGGCGCATGACCCAGAAATACTAAATGATTTTAAGAGGTTTGAGGAAATGGCGTTGGTTGGATTATGGTGCATTCATCCAGACCCAAGTCTTAGACCAACAATGAAGCAGGTGAATCAAATGCTAGAGGGAACCAATGGAGTTGGGGTTCCTCCATTGCTCTATGATCAGATGATAGCAGATCAAAGCTTGTAG 2373 0.4201 MAFSVFLPFILALALFLNGLHAQNSSSGINLNSGITAGSNSTLKSPSGDFEFGFHSLPSGLYLLAIWFGKIPERTLVWYRNPPVEANSLIQLNSQGHLVLTYPNRTIAQTIDNGDSASSVFMQDDGNFVMKDANSIFVWQSFDFPSNTMLPGQVLKENQMLYSKGKGALNYSNGNFRVLMQNDGNLLLSAYQWSDPAYWYSATTEFSNVSLVFNTSAFLYLTNGTNNIYTLTNNPPPTPVGDYYHRATMDENGNFQQYSYHKRNGSRWIRVWRAINDSCRVDAVCGLNGLCSSPDNESVKCDCLPGFIPFEPRDVSLGCHPATVINYCAEPSLLNFKLEVLNDTDFQFDSISDFSSAYNVDLEGCKKFIMDDCYVTAATFNATSFTCTKKRTPLVNARKSSSSKGLKALLKVPNSHDSATSKVSKKKSFNVRVFLEVMLAISATFACLFGALAVYYHPLSHRLMRRRKSLDASAIGINFREFTFRELHEATFGFSKIIGKGSSGKVYSGNLIIDDAEVAIAVKKLEKKIERSEKEFMTELKIIGRTHHRSLVRLLGFCIEKSHRLLVYELMPNGALSNFLFGQREKPQWGQRIEMALGIARGLLYLHEECETQIIHCDIKPQNVLLDANCKAKIADFGLSKLLNKEQTRTNTNFRGTIGYIAPEWLRSAPITAKVDVFSFGVMLLEIICCRRHVESSQDEGESEEDDSLLAKWILRCMISKKLEVVVAHDPEILNDFKRFEEMALVGLWCIHPDPSLRPTMKQVNQMLEGTNGVGVPPLLYDQMIADQSL 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2482 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 171 258 IPR036426 -
Glsi12g2482 790 SUPERFAMILY Protein kinase-like (PK-like) 482 774 IPR011009 -
Glsi12g2482 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Glsi12g2482 790 Pfam Protein kinase domain 495 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2482 790 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 37 778 - -
Glsi12g2482 790 ProSiteProfiles Protein kinase domain profile. 492 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2482 790 SMART serkin_6 492 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2482 790 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 571 775 - -
Glsi12g2482 790 ProSitePatterns Protein kinases ATP-binding region signature. 498 524 IPR017441 GO:0005524
Glsi12g2482 790 Pfam D-mannose binding lectin 75 159 IPR001480 -
Glsi12g2482 790 Pfam S-locus glycoprotein domain 243 309 IPR000858 GO:0048544
Glsi12g2482 790 CDD B_lectin 38 145 IPR001480 -
Glsi12g2482 790 Coils Coil 515 542 - -
Glsi12g2482 790 PIRSF SRK 1 788 IPR024171 GO:0004674
Glsi12g2482 790 CDD STKc_IRAK 498 770 - -
Glsi12g2482 790 Gene3D Transferase(Phosphotransferase) domain 1 571 774 - -
Glsi12g2482 790 FunFam S-receptor-like serine/threonine-protein kinase 461 570 - -
Glsi12g2482 790 Gene3D Phosphorylase Kinase; domain 1 466 570 - -
Glsi12g2482 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 203 IPR036426 -
Glsi12g2482 790 Gene3D - 24 143 IPR036426 -
Glsi12g2482 790 Gene3D - 145 285 - -
Glsi12g2482 790 ProSiteProfiles Bulb-type lectin domain profile. 28 143 IPR001480 -
Glsi12g2482 790 SMART blect_4 34 145 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2482 Glsi-ChrGlsi12 38760519 38762891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2482 418 770 Receptor kinase-like Gene Family AT5G45780 37.222 3.01e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi12g2482 Pkinase 1.1e-51 CL0016