Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2481 ATGGATGTTACCACTAAATTCCTCTTAACCTCTTTGACGTTTTTCCTCTTCGCTCTCTGCTCTAATGCTCAAAGCAGCTCTAAATCTATTGCACTGGGTTCCACCATTGTTGCTGGCTCTAATTCTTCTTGGCAATCACCCTCTGGTGATTTTGCTTTTGGGTTTTACCCTCTTGTCACTGGTCGCTATCTTGTTGGGATTTGGTTCGATAAGATTCCACAGAAAACTCTGGTTTGGTCTGCAAACCGAGATGATCCGGCTCAATTTGGATCAACCATCAATCTTACACTGAGTGGCCAGTTTTTGCTCCAACATGCTAACGGGACTTCATTTTCAATCTTTAATGGAACAAATATAGCTTCTGCTTCGATGCTGGATGATGGAAACTTCATCTTGAGGAACTCAATGTCAACCGTTATCTGGCAGAGCTTTGATTCGCCCACAGATACTATCCTAATAGGCCAAAATTTGGCCATGGGTCAGATTATCTACTCCAATGCCAATGGAACACAGGACTACTCAACTGGGAATTACAAGCTGGAGGTCCAACCTGATGGCAACATTGTTCTATCTGCTTTCAGGTTTGCTGATCCTGCTTATTGGTACACTGCAACTGCTGGCAATACAAGTGTGCGGCTAGTCTTTGACAACACAACGGCCTTTCTTTACGTTGTCAATGGCACCCACAACATATTCAACATGACAACCCAAGTACTAAACCCGGTTGAGAATTACTATTATCGAGCAACGATCAATGACCGTGGAAACTTTGAACATTTGGTTTGCCATAAAGAAAATGGAACCCAGTGGACAGTCATATGGGGGGCTATAACAGAGCCATGCACAGTGAATGCTATTTGCGGGGTTAATGGCTTTTGCACTTCACCTGACAATAAGACTGTCAATTGTGGCTGCTTGCCTGGTTATACATTTTTGGAACCCAGTGTTCCCTCCAAAGGCTGCTATCCAAGTGTGGTGATGGATTTTTGTGCCGCAAATTCTTCTGCATCAGACTTTTCAATGGACATAATTGAAAATGCTGATATACCCAATGAAATTTATGCAGATCTGCAAAGGATAGATTCTTCTGATTTGGACAGCTGCAAGAAGGAAGTAATGAATGATTGTTTCTGCATGGCTGGTGTTTTAATGAACAATGCTTGTTATAAGAAAAGGACACCTCTTTTAAATGCAAGAACAAGCATCCCTTCCACCAGCGACAGAGTGGCCCTAATTAAAGTTCCTCAAGTTCACAAACATGGTGGAAATGACTCACCCTCTTGGGTTGTTTTGCTTGTTTCCCTCTTATCTTGTTCTCTACTTGCTGTCGTGTTTGCAGCTACTGCCGTTTATCATCACCCAAAATTTCGCCATTGCATTCATAAAGAGCCACCGCCAAAGCCAAAGCCCGTGGACATCAATCTAAAGGCATTTTCATTCCAGGAGCTGAGAGAAGCCGCAGATCGGTTCAAAAACAAACTTGGTCAAGGAGCATTTGGTACTGTCTATGGTGGGGTCTTAACCATGGAGGGAGAACAGGTCGAGGTTGCCTTGAAACAACTGGAAAAAGTAGCAGAACAGGATTTGCATCAAATTGAAGATGGAACCGAAGGTGATGACATGATACTCATAGATTGGGTTCTACATTTGGCAAAAGAAAGGAATCTAAGAGCTACTGTGAGTCATGATGTTGAAGCCATAAATGATTTCAAGAGGTTTGAGAGAATGGCAATGGTAGGATTGTGGTGCCTATGTCCTAACCCAACTGTTCGACCGTCTATGAAGAAGGTGACTCAGATGTTGGAAGGAACTATAGAAGTTGGTGTTCCACCACTGGCTGATGACTTGAATTCCAGCATCACTGCTGGATCAAATTCTTCTTGGAAATCTCCCTCGGGTGATTTTGAATTCGGATTCTACCCTCTTTCCTCTGGTCTCTATCTGGTTGGAATATGGTTCCGGAAAATCCCAGAGAGAACTCTAGTTTGGTACCATAATCCCCCTGTGGAAGTAAATTCCATAATCCAACTCACTTCTTCAGGCCACCTTCTGCTGACGTATCTAAATGGAACCACTGCTCAGACTATAGACGACGGAGACAATGCAAGTTCTGCCTCCATGCAAAATGATGGCAACTTTGTAAGAGTTTTTCTCAAGGTCATGCTCTCAATTAGTGCCACCCTTGCCTGCCTGTTTGGAGCACTTGCTGTCTACGATCGCCCTTTAGCTCAGAGACTAATGAGAAGGAAGAAGACACAGATTGCAAGTGCCATTGGAATCAATTTCAGAGAATTCACATTTCAGGGGCTTCGTGAAGCAACAGGTGGATTTAGTAAGACTATTGGTAAGGGATCTTCAGGAAATGTCTACAGTGGAAATCTAGTGATAGATGTTGCAGAAGTTGCTATTGCAGTGAAGAAGCTGGAGAAGAAGATTGAAAGAAGTGAGAAGGAGTTCATGAGTGAGCTCAAAATAATCGGCCGTACCCATCACAGAAACCTGCACCGTCCAATTTCTTGTTTGGACGGCAAGAAAAACCTTAATGGAGTCAGAGGATTGAAATGGCTCTTTGAAATGCGAGAGGCTCACTTGAGGCATACAGAATCGAGTCAAGAAGATGAAGAAAGTGAAGAGGATGATGCAGTTCTTTCAAAATGGGTTCAAAGAAGCATGACGTCTAATAAGCTAGAGGTGGTGGTGGGCCGTGCTCAGGGAAGATCAGATTAA 2727 0.4334 MDVTTKFLLTSLTFFLFALCSNAQSSSKSIALGSTIVAGSNSSWQSPSGDFAFGFYPLVTGRYLVGIWFDKIPQKTLVWSANRDDPAQFGSTINLTLSGQFLLQHANGTSFSIFNGTNIASASMLDDGNFILRNSMSTVIWQSFDSPTDTILIGQNLAMGQIIYSNANGTQDYSTGNYKLEVQPDGNIVLSAFRFADPAYWYTATAGNTSVRLVFDNTTAFLYVVNGTHNIFNMTTQVLNPVENYYYRATINDRGNFEHLVCHKENGTQWTVIWGAITEPCTVNAICGVNGFCTSPDNKTVNCGCLPGYTFLEPSVPSKGCYPSVVMDFCAANSSASDFSMDIIENADIPNEIYADLQRIDSSDLDSCKKEVMNDCFCMAGVLMNNACYKKRTPLLNARTSIPSTSDRVALIKVPQVHKHGGNDSPSWVVLLVSLLSCSLLAVVFAATAVYHHPKFRHCIHKEPPPKPKPVDINLKAFSFQELREAADRFKNKLGQGAFGTVYGGVLTMEGEQVEVALKQLEKVAEQDLHQIEDGTEGDDMILIDWVLHLAKERNLRATVSHDVEAINDFKRFERMAMVGLWCLCPNPTVRPSMKKVTQMLEGTIEVGVPPLADDLNSSITAGSNSSWKSPSGDFEFGFYPLSSGLYLVGIWFRKIPERTLVWYHNPPVEVNSIIQLTSSGHLLLTYLNGTTAQTIDDGDNASSASMQNDGNFVRVFLKVMLSISATLACLFGALAVYDRPLAQRLMRRKKTQIASAIGINFREFTFQGLREATGGFSKTIGKGSSGNVYSGNLVIDVAEVAIAVKKLEKKIERSEKEFMSELKIIGRTHHRNLHRPISCLDGKKNLNGVRGLKWLFEMREAHLRHTESSQEDEESEEDDAVLSKWVQRSMTSNKLEVVVGRAQGRSD 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2481 908 Gene3D Phosphorylase Kinase; domain 1 757 848 - -
Glsi12g2481 908 ProSitePatterns Protein kinases ATP-binding region signature. 781 807 IPR017441 GO:0005524
Glsi12g2481 908 SMART blect_4 619 728 IPR001480 -
Glsi12g2481 908 SMART blect_4 35 147 IPR001480 -
Glsi12g2481 908 SUPERFAMILY alpha-D-mannose-specific plant lectins 647 714 IPR036426 -
Glsi12g2481 908 Pfam D-mannose binding lectin 76 159 IPR001480 -
Glsi12g2481 908 Gene3D Transferase(Phosphotransferase) domain 1 534 610 - -
Glsi12g2481 908 Pfam S-locus glycoprotein domain 242 309 IPR000858 GO:0048544
Glsi12g2481 908 ProSiteProfiles Bulb-type lectin domain profile. 21 145 IPR001480 -
Glsi12g2481 908 SUPERFAMILY Protein kinase-like (PK-like) 475 525 IPR011009 -
Glsi12g2481 908 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 205 IPR036426 -
Glsi12g2481 908 Gene3D Phosphorylase Kinase; domain 1 466 533 - -
Glsi12g2481 908 Pfam Protein tyrosine and serine/threonine kinase 777 841 IPR001245 GO:0004672|GO:0006468
Glsi12g2481 908 Gene3D - 147 283 - -
Glsi12g2481 908 Gene3D - 611 717 IPR036426 -
Glsi12g2481 908 Gene3D - 22 145 IPR036426 -
Glsi12g2481 908 Coils Coil 798 825 - -
Glsi12g2481 908 SUPERFAMILY Protein kinase-like (PK-like) 753 845 IPR011009 -
Glsi12g2481 908 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 718 838 - -
Glsi12g2481 908 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 24 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2481 Glsi-ChrGlsi12 38754945 38759164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2481 499 611 Receptor kinase-like Gene Family AT4G18250 33.333 3.47e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi12g2481 PK_Tyr_Ser-Thr 5.5e-07 CL0016