Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2479 ATGAAGAGCAAGAAATGCGTTCTCGCAGCTTCTGATACTCTCAAACATTTAGTTTTCCAGCTTCTGTCGCTCCTCTCCTCACACTTCATTCCTCCGTCTCTTGTTCCGCATTGTGCTGCAGCAAGAATGGCAGAACCTGCATATACTGTGGCATCTGACAGTGAAACCACCGGGGAGGAAAAGTCATCTTCAACTTTTCCTGAAATTGCAATTGGAATTGATATTGGCACATCACAATGTAGTGTTGCCGTGTGGAATGGATCCCAGGTAGAGCTTCTGAAGAATCCAAGAAACCAGAAGCTTATGAGATCATATGTGACTTTCAAAGATGACACCCCTTCTGGTGGAGTTAGCAGTCAACTCTCTCATGAGCATGAGATGTTGTCTGGAGCCACTATCTTCAACATGAAACGCTTGATCGGCAGAGTTGATACTGACCCAGTTGTTCATGCAAGTAAAAATCTCCCATTTCTGGTGCAGACTCTGGATATTGGTGTTCGCCCATTCATTGCAGCATTAGTGAACAATATGTGGAGATCTACCACTCCAGAAGAAGTCCTGGCAATATTTCTGGTGGAATTAAGAATCATGGCTGAATCTCATCTGAAACGACCAATAAGAAATGTAGTTCTCACAGTTCCAGTTTCATTCAGTCGATTCCAGCTGACCAGGATAGAACGTGCTTGTGCCATGGCTGGCCTTCATGTTCTGAGGCTCATGCCTGAACCAACAGCTGTGGCTTTGTTATATGGGCAGAAACAGCAGCAGACTTCTCATGAGAATATGGGCAGTGGAAGTGAGAAGATTGCTGTCATTTTCAATATGGGTGCTGGTTATTGTGATGTTGCTGTCACTGCTACAGCTGGAGGAGTTTCGCAGATAAAAACCTTGGCGGGAAGTACTATTGGAGGAGAAGACTTACTTCAGAACATGATGCATCATCTCTTACCGGATTCTGAAAGTCTATTTAAGAGCAAGGGAGTTAAAGAAATCAAATCAATGGGCTTGCTCCGAGTTGCTACCCAAGATGCAATTCACAGGCTTTCCTCTCAGACTAGTGTCCAGGTTGATGTAGACTTGGGAGATAATTTGAAGATATGCAAGGTTGTTAACCAGATCGAGTTTGAGGAAGTGAACAAGAAGTTGTTTGAGAAGTGTGAAAGCCTCATCATCCAGTGTTTGCAAGACGCAAAGGTAGAGGTTGAGGATGTAAACGATGTAATAGTTGTAGGTGGATGTTCATACATTCCGAAGGTGAAGAATCTTGTTACTAACATATTCAAAGGAAAGGAACTTTATAAAGGTATGAATCCTTTAGAAGCTGCAGTTTGCGGTGCAGCAGTGGAGGGAGCTGTGGCTTCGGGGATCAATGATCCCTTTGGTAACCTGGACTTGTTAACAATTCAAGCCACACCTCTTGCTATAGGGATCCGAGCGGATGGAAACAACTTTGTCCCTGTAATCCCAAGGAATACCACAATGCCAGCACGGAAGGAGGTGGTTTTCACAACTATCCATGATAATCAAACTGAGGCATTGATCATTGTGTATGAGGGTGAGGGAAAGAAGGTGGAAGAGAATCACTTGTTGGGATATTTCAAGATAGTGGGAATTCCTGCAGCACCAAAAGGAGTGGCAGAAATAAATGTGTGCATGGACATAGACGCTGCAAATGTGCTGAGAGTGTTAACTGGTGTAGTGATGCCTGGGTCTCGACAACCTGCAGTTCCTGTTATGGAAGTGAGGATGCCAAGTGTTGATGATGGCCACGGTTGGTGTGCTGAGGCCCTTAATAAAACTTATGGTTCTACGCTGGACTTGGTTACTGTCCAGAAGAAGGCATAA 1845 0.4434 MKSKKCVLAASDTLKHLVFQLLSLLSSHFIPPSLVPHCAAARMAEPAYTVASDSETTGEEKSSSTFPEIAIGIDIGTSQCSVAVWNGSQVELLKNPRNQKLMRSYVTFKDDTPSGGVSSQLSHEHEMLSGATIFNMKRLIGRVDTDPVVHASKNLPFLVQTLDIGVRPFIAALVNNMWRSTTPEEVLAIFLVELRIMAESHLKRPIRNVVLTVPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYGQKQQQTSHENMGSGSEKIAVIFNMGAGYCDVAVTATAGGVSQIKTLAGSTIGGEDLLQNMMHHLLPDSESLFKSKGVKEIKSMGLLRVATQDAIHRLSSQTSVQVDVDLGDNLKICKVVNQIEFEEVNKKLFEKCESLIIQCLQDAKVEVEDVNDVIVVGGCSYIPKVKNLVTNIFKGKELYKGMNPLEAAVCGAAVEGAVASGINDPFGNLDLLTIQATPLAIGIRADGNNFVPVIPRNTTMPARKEVVFTTIHDNQTEALIIVYEGEGKKVEENHLLGYFKIVGIPAAPKGVAEINVCMDIDAANVLRVLTGVVMPGSRQPAVPVMEVRMPSVDDGHGWCAEALNKTYGSTLDLVTVQKKA 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2479 614 Pfam Hsp70 protein 70 562 IPR013126 GO:0005524|GO:0140662
Glsi12g2479 614 SUPERFAMILY Actin-like ATPase domain 69 253 IPR043129 -
Glsi12g2479 614 CDD HSP70_NBD 71 451 - -
Glsi12g2479 614 Gene3D - 134 189 - -
Glsi12g2479 614 FunFam Heat shock 70 kDa protein 8 459 574 - -
Glsi12g2479 614 Gene3D Actin; Chain A, domain 4 304 385 - -
Glsi12g2479 614 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 466 570 IPR029047 -
Glsi12g2479 614 PANTHER HEAT SHOCK PROTEIN 70KDA 70 563 IPR013126 GO:0005524|GO:0140662
Glsi12g2479 614 SUPERFAMILY Actin-like ATPase domain 267 452 IPR043129 -
Glsi12g2479 614 Gene3D - 255 433 - -
Glsi12g2479 614 FunFam Heat shock 70 kDa protein 8 134 189 - -
Glsi12g2479 614 PRINTS 70kDa heat shock protein signature 545 561 - -
Glsi12g2479 614 PRINTS 70kDa heat shock protein signature 209 229 - -
Glsi12g2479 614 PRINTS 70kDa heat shock protein signature 97 109 - -
Glsi12g2479 614 PRINTS 70kDa heat shock protein signature 404 420 - -
Glsi12g2479 614 PRINTS 70kDa heat shock protein signature 436 456 - -
Glsi12g2479 614 PRINTS 70kDa heat shock protein signature 464 483 - -
Glsi12g2479 614 PRINTS 70kDa heat shock protein signature 69 82 - -
Glsi12g2479 614 Gene3D - 71 451 - -
Glsi12g2479 614 FunFam Heat shock 70 kDa protein 8 304 385 - -
Glsi12g2479 614 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 461 574 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2479 Glsi-ChrGlsi12 38744485 38748627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2479 70 562 Calmodulin-binding Proteins AT3G12580 38.690 1.82e-105 330