Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2474 ATGAATGGTGCTGCAAGTGTTGAGGCAGAGTACTCTGAGTTTGTGGAAGTTGATCCTTCAGGAAGATATGGAAGAGTACACACCCTCTCTTACTCCCCAACTCTGCTCTGTTATTTTATTTACAGAGCATTCGATGAGTACGAAGGGATAGAAGTGGCATGGAATCAAGTGAAGCTCTATGATTTTCTGCAGAAACCTGAAGATCTTGAGAGGTTGTACTGTGAAATTCATCTTCTCAAGACTTTGAAACACAAAAACATCATGAAGTTCTATACTTCCTGGGTTGATACTAATAACAGGCACATTAACTTTGTCACGGAGATGTTTACCTCTGGGACTCTCAGACAGCAGATTTTAGAAGGGCTTCTCTATCTTCACAGTCATGACCCTCCTGTGATCCACAGAGATCTCAAGTGTGATAATATTTTCATCAATGGAAACCAAGGGGAAGTCAAAATTGGCGATCTTGGCCTCGCTGCAATTCTCCGGAAATCTAATGCTGCTAGTTGCGTTGGGACACCTGAGTTTATGGCTCCAGAAGTGTATGAAGAGGATTATAATGAATTAGTTGATATATACTCTTTTGGAATGTGCATATTGGAGATGGTCACCTTAGAATATCCTTACAGTGAATGTTCCCATCCTGCTCAAATTTACAAGAAAGTTACCTCTGGGAAGAAACCAGAAGCTCTTTACAAAGTTAAGGATCCTGAGGTTCGACAATTTGTAGAGAAATGCTTAGCAACTGTGTCCCTCAGGCTTTCTGCTGAGGAACTTCTGGAAGACCCCTTTCTCCAAATTGATGATTATGGTTCTGAGATGATGAAACCACTACAGTATCAAAGAGATTGCTATGAAGAAGTAACCCCATTATTTGGACCACCTCTTAATGGAATTCATAACAGTAACAACTCCATCAATGAGTACACTGATTATCTCAGTGGTTATGGACCTGAATCTGAGGTAGATTATCATCAGGTTGATTTTGAAACCAGCGAAATTGATCTCTTTGATTGTGAAGAGGATGATGATTTGGGTGAAGTTGACACTGCAATCAAAGGTAGGAGAAGAGAGGATGATGGCATCTTTCTGAGACTCAGAACAGCAGATAAGGAAGGTCGAGTTCGAAACATCTACTTCCCATTTGACATCCGGACTGATACAGCATTGAGTGTTGCAAATGAAATGGTAGCTGAGCTAGACATAACTGACCAAGATGTAACAAAAATAGCAGAAATGATAGATAATGAAATTGCAAACTTGGTCCCAGAGTGGAAAACAAGACCCAGAATAGAGGAAAGTCCAGAAAGCACAAGTACAAGTTTCTGCCTCAATTGTGCTTCAAATGGTTCCTTATTTGATTATGTATCATCAAATAACCCCTCAGACAAGAATCTGCAAATTCTTCAATGTTCCAGCAATGGGTGTGCAGCAGTTCATGGCCGTTTCGAGGAGATTACGTACCAAGTTGAAGGGCCTGAAAATTGTACTACAGAAGGTGCACCGGCTGCATCAGGCCAACCCACTGGCATTCAGTATACCGATATCTGGGCTCAGAGAGATGAACCAGAATTAAGTTCAGAGGAATTAAGAGACATACATTGTGACAAAGCTCATGAAGCATCAAATCAATCAACAATTAAGGAGGATGAGAGAATTATTAATGTGGATGATCAAATGGATCCCAATATAGAAGACACAACTTCCTGTCATTCATTAGATTGTGTTTTCTTGGACTACGACAATGAAATTAGGCAAGAATTGAGATGGCTCAAAGCAAAGTACCAAATGCAGTTAAGGGAACTAAGAGACCATCAATTAGGGGGAAAACCAAAATTCACAAGCGTCTATCCTGACCCTGAAGAACTAGAAGAGCATAGAAAAATTGGTGGAGTTCCAAGGCTATCTGCTACAACCCACTTGAAGATGCAGAACAAAAAACAACTCTTGAGGCTTCTGGCCGCTGGAAAGCGATTTTCTATTGATGCTGCAATGAAAGGCGCCACTATGGCTAATCAAATGGTGCAAGATGCATATGAGACGAGTGGATCTAATAGTCCTGAGCAAATGGTCACGGCCAAGGATTTCTATGCAGGAGCTTTGCTTCCACACTCCCTTCACAGAGCCACCTCTCTTCCAGTCGATGCAATAGATGTCTAG 2160 0.4125 MNGAASVEAEYSEFVEVDPSGRYGRVHTLSYSPTLLCYFIYRAFDEYEGIEVAWNQVKLYDFLQKPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTNNRHINFVTEMFTSGTLRQQILEGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAASCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTLEYPYSECSHPAQIYKKVTSGKKPEALYKVKDPEVRQFVEKCLATVSLRLSAEELLEDPFLQIDDYGSEMMKPLQYQRDCYEEVTPLFGPPLNGIHNSNNSINEYTDYLSGYGPESEVDYHQVDFETSEIDLFDCEEDDDLGEVDTAIKGRRREDDGIFLRLRTADKEGRVRNIYFPFDIRTDTALSVANEMVAELDITDQDVTKIAEMIDNEIANLVPEWKTRPRIEESPESTSTSFCLNCASNGSLFDYVSSNNPSDKNLQILQCSSNGCAAVHGRFEEITYQVEGPENCTTEGAPAASGQPTGIQYTDIWAQRDEPELSSEELRDIHCDKAHEASNQSTIKEDERIINVDDQMDPNIEDTTSCHSLDCVFLDYDNEIRQELRWLKAKYQMQLRELRDHQLGGKPKFTSVYPDPEELEEHRKIGGVPRLSATTHLKMQNKKQLLRLLAAGKRFSIDAAMKGATMANQMVQDAYETSGSNSPEQMVTAKDFYAGALLPHSLHRATSLPVDAIDV 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2474 719 ProSiteProfiles Protein kinase domain profile. 12 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2474 719 FunFam probable serine/threonine-protein kinase WNK9 360 444 - -
Glsi12g2474 719 SUPERFAMILY Protein kinase-like (PK-like) 40 266 IPR011009 -
Glsi12g2474 719 FunFam probable serine/threonine-protein kinase WNK9 98 270 - -
Glsi12g2474 719 FunFam Probable serine/threonine-protein kinase WNK1 9 107 - -
Glsi12g2474 719 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 364 418 IPR024678 GO:0004674|GO:0005524
Glsi12g2474 719 SMART serkin_6 12 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2474 719 Gene3D Transferase(Phosphotransferase) domain 1 108 270 - -
Glsi12g2474 719 CDD STKc_WNK 40 265 - -
Glsi12g2474 719 Gene3D Phosphorylase Kinase; domain 1 7 107 - -
Glsi12g2474 719 Pfam Protein kinase domain 41 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2474 719 Gene3D - 361 445 - -
Glsi12g2474 719 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 610 - -
Glsi12g2474 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2474 Glsi-ChrGlsi12 38708097 38711095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2474 1 486 MAP Kinase Kinase Kinase AT3G22420 55.331 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Glsi12g2474 Pkinase 1.3e-36 CL0016