Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2470 ATGGAACCGGGGATGAGATCAGCTGGCCCTTCTGGGATTGTCGTGAAAAACAGAAACTCAGCGGGTTGTTTAATTGTTAGGAAGAAGGGAGATGCGTCGCATGGTGTGGTTGGTTCTTCAACTTCTCGGAAGCTGTATGATACAAAAAAGATGAAGAAAAGACAGAGTATGGCATTAAGTGATTCGGGATCAAGCGATGAGTTGCTGATGCCTCCTACCAGAAGGGTGGGTCCTGAGACTGTCCGAGTCTGCAATGGTTTGACTGCCTTTGAGCGGGGTATGGTTGAAGAGAGTGAATTTGGTAGAAAGAGGGATAGAATGGCGCAAATTAGGCGGAATGAGGATGGCCTGATTGATAAAAATGGTTTTGAGGAGAGGGAAGTAAAGCGGAATAAGTTGGATGTCTATGATTTTGATGAATATGAGGGTATTCGTGCGGAGAAGACGCGAAGGAGGCATTTAGATGATAATGGAATTAGTTTTGGTGGAGGAAGGTATATGGGATCAATGCATGCTGCTAGAAGTGGCATTGAAAGGGAATTTGATACAGGGTCTAGTAGACACATTCTTGAAAAGAGAAAGAAATCCTATAATGATAGGGCTAGTGGCTTGTACCTGGGAGATAATTTAGACCACAGCAGGTTTACAATGGACAGGGATGGAGCTCAGCTGCCTCTACCCTTGTTGAGAGAGAGGTTTGTTTGTAATTCAGACGAATCCATAAGGGTTCAGGGGAAAAATGGTGTTTTAAAGGTGATGGTCAATAAGAAGAAGGTGGGTGGACCATTAGAACACTATGATCACTGCAAACCTTTGGAAAACAGACAGAGTTTGAGGAGTGAGGGCACTTCCAAGAGAAATGTTCTGATGCCTCCTTCGTCATACTCAGAAACAAAACTTGCTGAGAAATCAGGTTTAGTAGTCAGGCCAGAAAAAAGGAAGATAACGTCAAGAAAATCGTTGTCAAGTAAGGACAGTAAGGGTGATGAGTGGGACTCAGAGAATAGCGACACATCATTGAACCATGGACTTGAAAATACTGAAGCTCGCAAGTCTATGAAGAGGGTAAGTTCTGAGGACGAACAGACTCCTATGCATGATAAGCTCCCACCTACAAGAACGAAAGAAGGAAAAGTCAGGCGTGGTAGTGGCACAGAGAAACAGAAACTGCGAGAACGAATAAGGGAGATGCTGCTGGGTGCAGGCTGGACAATAGACTATCGGCCTCGAAGGAATAGAGACTATCTAGATGCAGTTTATATTAGTCCAGGGGGTACAGCCTACTGGTCCATCATCAAGGCATATGATGCACTTCAAAAGCAATTGAATGAAGATGAGAAGGAGGTCAAGCCCAGGGGGGAGGTATCTTCCTTTGCTCCTATCTCAGATGAGGTGCTTAGTCAATTAACTAGGAAAACTCGAAAGAAGATGGAGAAAGAATTGAAGAAGAAGCAGAGAGATTGTAGTGAGAGTGATAGTGAAAAGGAACCTGACAATAAAAGATCTGCCAGCAACAAGCGTACTATGAATAGCTTTGATAGTGATAGCAACGAGGAGAAACTAAGCTCCTTTAAAAAACAGGGAAATAAGTCAATGAAAAATAAGATGACTGAAAATGCAATTTCTGGTGCTAGCTCTAAATGTGAGAACCCTGCCCATCACTCAAATGATGACTCAGAAAAACCATTCTCAGTATGTGATCCCCATCTGCCACATGGAAGGAAAAGTAGAAAACATGGAAGATGTACTTTGTTAGTTCGTAGTTCTAACAAGGGATTAAATTCAGAATCTGATGGCTTTGTTCCATATACTGGAAAACGGACAGTTCTTTCCTGGTTGATTGACTCTGGGACAGTGCAGTTAAGCCAAAAGGTTCATTATCGGAAGCGAAAGCGAGTAATGCTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAAATCCTCACAGTGTCAAAGTTTGAGATTCATGCCGGAAGCAAATTGCGCCAGCCATTTCAAAATATATATTTGGATTCTGGAGTTTCTCTTCTGCAGTGCCAGATAGATGCTTGGAATAGACAAGAGAATTCTGAAAAAAATTGTTTCCACTCTGTAGATATTGATGGTGATGATCCAAATGACGATACCTGTGGTATATGTGGAGATGGTGGGGATTTAATCTGTTGTGATGGTTGCCCATCGACTTTTCATCAGAACTGCTTGGATATACTGATGCTTCCCCCTGGTGAATGGCATTGCCCAAATTGCACCTGCAAATTCTGTGGACTAGCCACTGAAACTTTTAAAAAAGGAGATGATACAACTGTATATGACCTACAAACTTGCAACTTATGTGAGAAAAAATACCATCAATCTTGCATGAAGGAGATGGATGTCGGTCCTGATAACGCCAATATTTCAGGCCCTTCTTTTTGTGGAAAAGAGTGCAAAGAGCTTTTCGAGCACTTGAAGAAGTACCTTGGTAGCAAGCATGATCTAGAAGCAGGCTTTTCATGGTCTCTTATTCATAGAACTGATGAAGAATCTGAGGCAGCTAGTAGAGGGATTTCTCAAAGGGTAGAGTGCAACTCCAAGCTAGCTGTTGCACTGACTGTGATGGATGAATGTTTTTTACCTGTTGTTGACCGGAGAAGTGGCATTAGTTTAATTCATAATGTTCTATATAATAGTGGGTCAAACTTCAGTAGGCTGAACTACAGTGGTTTTTACACTGCAATTTTGGAGCGGGGTGATGACATAATTTCTGCTGCATCTATCAGCTTCGTCTCTTACATTTGTGCTCAACACTTGGTAGTTAGATTGACTTGGAAATTGGTAGTAAGGAGGGACGTTTGTAGGTTGACAGTCCCCTTACTCTTTTCATCTTCCCAAGAAATGCCTTGGTACAATTTGATGCTTTTAATGAGGAATTATGAGAGTCATGAGACAGATACTAGCTCTAGGTTCCATGGGACAAAGTTGGCGGAGATGCCATTCATTGGAACTCGCCATATATATAGACGTCAGGGGATGTGCCGCCGCCTTTTTTCTGCCATTGAATCGGTTGAGAAACTGGTTATTCCTGCAATTGCTGAACTCATGCATACGTGGACAACAATTTTTGGGTTCACACATCTTGAGGAATCACTCAGGCAAGAAATGAGGTCATTGAATATGTTGGTCTTCCCTGGTATAGACATGTTACAGAAGCTGCTAGTGAGGCAAGAAAAACTTGAGGGGAAGACAACCTCTGCAGGTTCTGACTGTGCTGAGCAAATGCAAAACGTAGACAAGTTATTTATTAAGTCCAATATGGTTATGGATTCCTCAGCTCTGCAAGATCCTCATGGGAGTGATGATGTTGGTTCTAATCCTGCGAATGAGACAACTGATGAATGCAGTGACGCTTCCCAAGAACTAAATATTCAAGCTTTGGTTGACAGGAATTTATGTTCCAAATCTCATTCTGGGGAAAGGTTGACTGAATCAGCTTTAGATAAATGTATTTCTCCCACTAGTTTTAGTCATGGTGCTCTGGAGATGGAAAAGAAAGTAGTGTCAGCTTCTCCTGCTAAAGAAAATTTGCATCCTTCTCCCAAATGTCAAGTCATTTCGCCAAATGACACTTCTGTGACTAGTTGTCCACTAGATGCTCCTGATTGTGTTGGAAATCCAGCTTTGGTTCAGGGAGCTGCTCATTCTAACTCTGATTCAGCTGAAAATCTGGTTGAACCAGTTTCTGACAGGAAATGTCACTCTCCTCCTACTATGAATTCATCAGAGATTGAGAGTATTGCAGTTTCAGACTCTCAAGTGGTGAATAATGTCCTGTCTTCTAAAGAGGTTGATATGATTGATGCCCATAAGGCTCTTGAAGCTGTTCCTTTAGAGGGTTTGTCTGAAGAGAATAATACCAAGGGGATCAATAAAAACATAGATGTTTCTGGTTCTACTCTCAATCATTCTGAGTTGCCAATCAGATCTGATTTGAATGATGAATCTGCATCTGAAGGAGAAAGAAATTTACATGTGGGCACAGAAGTTGCTTCAAATTTAATGCATTTTCATGAAAGTGGCCTAAATGCATCCACGGATAGTTCTGAGACTGATCCAGCATATCATTTGATTGTGTCATTAAGTTCGGGCTCCTCTTATCATTTTATATCTGAATCTGGTGGAGTGCTTGGGTTTCTTCTCAAGCTTTATGTACCATTCGCTCTGTCTGCGTCTCCTTGTCTTCCAAAATGCCAGTCATTCCTGCTGCCTAAATCTACGGATAGGGTTTTTCTGAGAAATCTTACTCCGACTTTCTCATGTCTCCACAGTTCTGTCTTTTCAGTAAATCACGGTAATCTTATACGAATGGATCCTCTGAGAACGATCTCATCTTCTGCTTTGGCGGAAGACAACGGTTCACCTGTGACTACTTCACCAGCAGACTCAGGAGCTAGAATTGGAGAGGTGAAAAGGGTCACTAAAGAAACCAATGTATCGGTCAAAATAAACTTGGATGGTTCTGGGGTCTCTGATAGTAGTACTGGAATTCCCTTCCTTGATCATATGTTAGAAGGGCTGTTCGATATGCACGTAAAGTCAACTGGTGACATCCACATTGATGATCATCACACGGACGAAGGTGTTGCTCTTGCCGTTGGAACGGCTTTACTGCAGGCTTTTGGTGATAGAATAGTGAATGCTTCTGGTATGAGACTTCATATTCGGCAGTTTGCTGGAAAAAATTCTTATCATATTATTGAGGCAACCTTCAAAGCTTTGGCTAGGGCTCTTAGACAAGAGACAGAGTATGACCCACGTGGTGTTTGGACTGTGCCAAGTTCAAAAGGGATTCTATCGCGTAGTTGGATATATTTGGGTAGTATGCATACTCGGATTGAGCTACTAATATGCGTAGTTCTCCATAACGACAGTGCGTGGATGCCTTGTGATAATACTTGCCGTTACTATGGGCAAAACGACTGGGGCACTTTGAGCTGTATGCAGAGGATTGTATTGCAACTATGTTTAAATGGATTAGTTTGGAGGATTGCAAATAAAGATGCTGTCAAGAAAGAAAACGAGCTGCTGTTGCTATGA 5088 0.4214 MEPGMRSAGPSGIVVKNRNSAGCLIVRKKGDASHGVVGSSTSRKLYDTKKMKKRQSMALSDSGSSDELLMPPTRRVGPETVRVCNGLTAFERGMVEESEFGRKRDRMAQIRRNEDGLIDKNGFEEREVKRNKLDVYDFDEYEGIRAEKTRRRHLDDNGISFGGGRYMGSMHAARSGIEREFDTGSSRHILEKRKKSYNDRASGLYLGDNLDHSRFTMDRDGAQLPLPLLRERFVCNSDESIRVQGKNGVLKVMVNKKKVGGPLEHYDHCKPLENRQSLRSEGTSKRNVLMPPSSYSETKLAEKSGLVVRPEKRKITSRKSLSSKDSKGDEWDSENSDTSLNHGLENTEARKSMKRVSSEDEQTPMHDKLPPTRTKEGKVRRGSGTEKQKLRERIREMLLGAGWTIDYRPRRNRDYLDAVYISPGGTAYWSIIKAYDALQKQLNEDEKEVKPRGEVSSFAPISDEVLSQLTRKTRKKMEKELKKKQRDCSESDSEKEPDNKRSASNKRTMNSFDSDSNEEKLSSFKKQGNKSMKNKMTENAISGASSKCENPAHHSNDDSEKPFSVCDPHLPHGRKSRKHGRCTLLVRSSNKGLNSESDGFVPYTGKRTVLSWLIDSGTVQLSQKVHYRKRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNRQENSEKNCFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQNCLDILMLPPGEWHCPNCTCKFCGLATETFKKGDDTTVYDLQTCNLCEKKYHQSCMKEMDVGPDNANISGPSFCGKECKELFEHLKKYLGSKHDLEAGFSWSLIHRTDEESEAASRGISQRVECNSKLAVALTVMDECFLPVVDRRSGISLIHNVLYNSGSNFSRLNYSGFYTAILERGDDIISAASISFVSYICAQHLVVRLTWKLVVRRDVCRLTVPLLFSSSQEMPWYNLMLLMRNYESHETDTSSRFHGTKLAEMPFIGTRHIYRRQGMCRRLFSAIESVEKLVIPAIAELMHTWTTIFGFTHLEESLRQEMRSLNMLVFPGIDMLQKLLVRQEKLEGKTTSAGSDCAEQMQNVDKLFIKSNMVMDSSALQDPHGSDDVGSNPANETTDECSDASQELNIQALVDRNLCSKSHSGERLTESALDKCISPTSFSHGALEMEKKVVSASPAKENLHPSPKCQVISPNDTSVTSCPLDAPDCVGNPALVQGAAHSNSDSAENLVEPVSDRKCHSPPTMNSSEIESIAVSDSQVVNNVLSSKEVDMIDAHKALEAVPLEGLSEENNTKGINKNIDVSGSTLNHSELPIRSDLNDESASEGERNLHVGTEVASNLMHFHESGLNASTDSSETDPAYHLIVSLSSGSSYHFISESGGVLGFLLKLYVPFALSASPCLPKCQSFLLPKSTDRVFLRNLTPTFSCLHSSVFSVNHGNLIRMDPLRTISSSALAEDNGSPVTTSPADSGARIGEVKRVTKETNVSVKINLDGSGVSDSSTGIPFLDHMLEGLFDMHVKSTGDIHIDDHHTDEGVALAVGTALLQAFGDRIVNASGMRLHIRQFAGKNSYHIIEATFKALARALRQETEYDPRGVWTVPSSKGILSRSWIYLGSMHTRIELLICVVLHNDSAWMPCDNTCRYYGQNDWGTLSCMQRIVLQLCLNGLVWRIANKDAVKKENELLLL 1695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2470 1695 MobiDBLite consensus disorder prediction 512 526 - -
Glsi12g2470 1695 MobiDBLite consensus disorder prediction 31 73 - -
Glsi12g2470 1695 SUPERFAMILY Ribosomal protein S5 domain 2-like 1559 1596 IPR020568 -
Glsi12g2470 1695 SUPERFAMILY Ribosomal protein S5 domain 2-like 1482 1560 IPR020568 -
Glsi12g2470 1695 MobiDBLite consensus disorder prediction 469 503 - -
Glsi12g2470 1695 SUPERFAMILY FYVE/PHD zinc finger 704 761 IPR011011 -
Glsi12g2470 1695 Gene3D Imidazole glycerol phosphate dehydratase; domain 1 1473 1559 IPR038494 -
Glsi12g2470 1695 PANTHER PHD FINGER PROTEIN 12 351 1197 IPR042163 GO:0003714|GO:0045892
Glsi12g2470 1695 Pfam PHD-finger 715 757 IPR019787 -
Glsi12g2470 1695 Pfam Tify domain binding domain 637 687 IPR032308 -
Glsi12g2470 1695 SMART PHD_3 756 815 IPR001965 -
Glsi12g2470 1695 SMART PHD_3 714 755 IPR001965 -
Glsi12g2470 1695 MobiDBLite consensus disorder prediction 469 578 - -
Glsi12g2470 1695 ProSiteProfiles Zinc finger PHD-type profile. 712 757 IPR019787 -
Glsi12g2470 1695 MobiDBLite consensus disorder prediction 347 388 - -
Glsi12g2470 1695 MobiDBLite consensus disorder prediction 1109 1134 - -
Glsi12g2470 1695 ProSitePatterns Zinc finger PHD-type signature. 715 754 IPR019786 -
Glsi12g2470 1695 FunFam Imidazoleglycerol-phosphate dehydratase HisB 1474 1562 - -
Glsi12g2470 1695 MobiDBLite consensus disorder prediction 527 550 - -
Glsi12g2470 1695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 704 775 IPR013083 -
Glsi12g2470 1695 MobiDBLite consensus disorder prediction 273 388 - -
Glsi12g2470 1695 MobiDBLite consensus disorder prediction 551 571 - -
Glsi12g2470 1695 MobiDBLite consensus disorder prediction 276 300 - -
Glsi12g2470 1695 ProSitePatterns Imidazoleglycerol-phosphate dehydratase signature 1. 1536 1549 IPR020565 GO:0000105|GO:0004424
Glsi12g2470 1695 Coils Coil 467 494 - -
Glsi12g2470 1695 Pfam Imidazoleglycerol-phosphate dehydratase 1511 1560 IPR000807 GO:0000105|GO:0004424
Glsi12g2470 1695 CDD PHD2_CHD_II 715 754 - -
Glsi12g2470 1695 Gene3D Imidazole glycerol phosphate dehydratase; domain 1 1560 1618 IPR038494 -
Glsi12g2470 1695 MobiDBLite consensus disorder prediction 304 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2470 Glsi-ChrGlsi12 38674489 38687780 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2470 1 1104 PHD Transcription Factor Family AT4G14920 46.803 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi12g2470 TDBD 1.5e-21 No_clan