Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2468 ATGGAACCGGGGATGAGATCAGCTGGCCCCTCTGGGGTTGTGGTGAAGAACAAGAACTCATCGGGTTGTTTAATTGTTAGAAAGAAAGGAGATGCGTTGCCTGGTTGGGTTGGTTCGTCCAGCTCTCGGAAGCTGTATGATACAAAAAAGGTGAGGAAAAGACACAGTATGGCTTTAAGTGATTCAGGATCAAGCGATGAGTTACTGACGCCTCCTAGCAGAAGGGTGGGTCCTGAGACTGTTCGAGTCTGCAATGGTTTGACTGCCTTTGAGCGGGGTATGGTTGAAGGGAGTGAATTTGGTAGAAAGAGGGACAGAATGGGGCAAATTAGGTGTAATGAGGATGACCTAATTGATAATAATGGTTTTGAGGATAGGGAAATGAAACGGAAAAAGTTGGATGTCTATGATTTTGATGAATATGAAGGTATTCATGTTGAAAAGATACGAAGGAGGCATTTTGATGATAATGGAGTTGGTTTTGGTGGGGGAAGGTATATAGGATCAATGCATGCTGCCAGAAGTGGCATTGAAAGGGAATTTGATGCGGTGTCAAGCAGACGCATTCTTGAAAAGAGAAAGAATTCGTATTATGATAGGGCTAGTGGCTCCTATCTTGGAGATAATTTAGACCGCAGCAGATTTAAAACGAACAGGGATGGAGCTAAGCTGCCTCTTCCCTTTTCGAGAGAGAGTTTTGTCAGTAATTCAGATGAATCCATTAGGGTTCAGGGGAAAAATGGTGTTTTAAAGGTGATGGTCAATAAGAAGAAGGTGGGTGGACCATTAGAACACTATGATCACCACAAACCTGTGGAAAGCAGACAGAGTTTTAGGAGTGAGGATGCTGCCAAGAGGAATGTTCTGATCCGTCCTTCATCATACTCGGAAACTAAACTTGCTGAGAAATCAGGTTCAGTAGTTAAGCCAGAGAAAAGGAAGATAATGTCAAGAAAATCATTGTCAAATAAGGACAGTAAGGGTGGTGAGCTGGATTCAGATAACAGTGACACATCATTGAACCCGGGGCTCAAAAATACGGAAGCTCGCAAGTCTGTGAAGAAGGTAAGTTCTGAGGACGAACAGACTCCTATGCATGAAAAGCTCCCACCTACAAGAACGAAAGAAGGAAAGGTCAGGCGTGGTAGTGGCACAGAGAAACAGAAACTGCGAGAACGAATAAGGGAGATGCTGTTGAGTTCAGGTTGGACGATAGACTATCGACCCCGGAGGAATAGAGACTATTTAGATGCAGTTTATATTAATCCGGGGGGTACAGCCTACTGGTCAATCATCAAGGCTTATGATGCACTTCAAAAGCAATTGATTGATGATAATAAGGAGGTCAAGCCCAGGGGGGATGAATCTTCCTTTGCTCCTATTGCAGACGAGGTGCTCAGTCAATTAACAAGGAAAACTCGAAAGAAGATGGATAAAGAATTGAAGAAGAAGCAGAGAGTATACTATAGTGAGAGTGATAGTGAAAGGGAACCCCACATTAAAAGATCTGCCAGCAACAAGTATACTATGAATAGCAATGATAGTGATAGCAACGAAGAGAAACTGAGCTCATTTGTAAAGCAGGGAAGTAAGGCAATGAAAAATAAGATGACTGAAAATGCAGTTTCTGGCGCTAGCTCTAACTGTCAGAACCCTACCCATAACTCAAATGATGGTTCAGGAAAGTGTTTATCTGGATGTGATCCCCATCCGCGACATGGAAGGAAAAGTAGAAAACATGGAAGATGTACTCTGTTAGTTCGTAGTTCTAACAAGGGATTAAATTCAGAATCCGATGGATTTGTTCCTTATACGGGGAAACGGACAGTGCTTTCTTGGTTGATTGACTCTGGGACAGTGCAGTTAAGCCAGAAGGTCGAGTATCGTAAGCGAAAGCGAGTAATGCTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGTTGCTGTAGTAAAATCCTCACAGTTTCGAAGTTTGAGATTCATGCAGGAAGCAAATTGCACCAGCCATTTCAAAATATATATTTGGATTCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGAATAGACAAGAGAATTCTGAGAAAATTGGTTTCCAGTCAGTAGATATTGATGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGTGGGGATTTAATCTGTTGTGATGGTTGCCCATCCACTTTTCATCAGAACTGCTTGGATATACAGATGCTCCCTCCTGGCGAATGGCATTGTCCCAATTGCACCTGCAAATTCTGTGGAATAGCCAGTGGGACTATTAAAAAAGGAGATGATGCAACTGTATATGACTTACAAACTTGCAACTTATGCGAGAAAATATACCATGAATCGTGCATGAAGGAGATGGTTGCCTTTCCTGATAACGCCAATATTTCAGGCCCTTCTTTTTGTGGAAAAGGATGCAAAGAGCTTTTTGAGAACTTGAAGAAGTACCTTGGTAGCAAGCATGATCTAGAAGCAGGCTTTGCATGGTCTCTTATTCATAGAACTGTTGAAGAATCTGAGGCAGCTAGTAGAGGGATTTCTCAAAGGGTAGAGAGCAACTCCAAGCTAGCTGTTGCACTGTCTGTGATGGATGAATGTTTTTTACCTGTTGTTGACCGGAGGAGTGGGATCAGTTTAATTCATAATGTTCTATATAATAGTGGGTCTAACTTCAGTCGGCTGAATTACAGTGGTTTTTACACAGCTATTTTGGAGCAGGGCGATGATATAATTTCTGCAGCATCAATCAGGTTCCATGGAACGAAGTTAGTGGAGATGCCATTCATTGGAACTCGCCATATATATAGGCGTCAGGGGATGTGCCGCCGCCTTTTCTCTGCCATTGAATCGGCTCTGTGCTCTCTGAAGGTTGAGAAACTGGTTATTCCTGCAATTGCTGAACTCATGAATACATGGACAACAATTTTTGGCTTCACACATCTTGAGGAATCACTTAGGCAAGAAATGAGATCATTGAATATGTTGATCTTCCCCGGTATAGATATGTTACAGAAGCTGCTAGTGAAGCAAGAAAAACTTGAGGGGAAAACAACCTCCACAGGTTTTCAGCAAATGGAAAACGGAGACAAGCTTACTTCTGTTACACCCTGTATGGAAAATAGACGAGATATAGATTCCTCAGCTCAGCAAGACCCTCGTGGAAGTGATGATGCTGATTCAAATCCTACCAATGAAACAGCTGATGAATGTAGTGATGCTTCCCAAGAACTAAATAATCAAGCTTCGGTTGATAGGACTTCATGTTCCAAATCTCATTCCAGGGAAAAGTTGGCTGGATCAGCTTCAGAGAGATGTGTCTCTCCCTCTAGTAATAGTAATGGTGTTCTGGAGGTGGAAAATAAAGTAGTCTCAACTTCTCTTGCTAAAGAAAATTTACATCATTATCCCAAATGTCAATTCATTTTGCCAAATGATACTTCTGTGACAAGTCATCCATTAGATGCTCCTGATAACCTTGAAAACCCAGCTTTGGTTCAGGGAGCTGCTCTTTCTAACTCTGATTCAGCAGAAAATCTGGTTGAACCTGTTTCTGACTGGAAATGTCACTCTCCGACTGCTATGAATTGTGCTTCAGTGCTTGAGTGTATTCCATTTTCGGACTCTCATGTGGTGGATAATGATTTGCCTTCTAAAGAGGTAGATATGATTAATGCCCATGAAGTTCTCGAAGCTGTTCCTTCAGAGGATTTGTCTGAAGAGAATAATACCAAGGGGATCAATGAAACAGATATTTCTGGCTCTACTCTCAATCAAGTCGATGCAAGTTCCTCAATAATCAGGTCTGATTTGAATGGTAAAACTGCATATGAAGGAGAAAACAATTTATATGTGGGCACAGAAGTTTCTTCAAGTGTAATGCATTCTCATGGAAGTGGCGTAAATGCATCCACTGATAGTTCTGAGATGGATCTATTATAA 3966 0.4191 MEPGMRSAGPSGVVVKNKNSSGCLIVRKKGDALPGWVGSSSSRKLYDTKKVRKRHSMALSDSGSSDELLTPPSRRVGPETVRVCNGLTAFERGMVEGSEFGRKRDRMGQIRCNEDDLIDNNGFEDREMKRKKLDVYDFDEYEGIHVEKIRRRHFDDNGVGFGGGRYIGSMHAARSGIEREFDAVSSRRILEKRKNSYYDRASGSYLGDNLDRSRFKTNRDGAKLPLPFSRESFVSNSDESIRVQGKNGVLKVMVNKKKVGGPLEHYDHHKPVESRQSFRSEDAAKRNVLIRPSSYSETKLAEKSGSVVKPEKRKIMSRKSLSNKDSKGGELDSDNSDTSLNPGLKNTEARKSVKKVSSEDEQTPMHEKLPPTRTKEGKVRRGSGTEKQKLRERIREMLLSSGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLIDDNKEVKPRGDESSFAPIADEVLSQLTRKTRKKMDKELKKKQRVYYSESDSEREPHIKRSASNKYTMNSNDSDSNEEKLSSFVKQGSKAMKNKMTENAVSGASSNCQNPTHNSNDGSGKCLSGCDPHPRHGRKSRKHGRCTLLVRSSNKGLNSESDGFVPYTGKRTVLSWLIDSGTVQLSQKVEYRKRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLHQPFQNIYLDSGVSLLQCQIDAWNRQENSEKIGFQSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQNCLDIQMLPPGEWHCPNCTCKFCGIASGTIKKGDDATVYDLQTCNLCEKIYHESCMKEMVAFPDNANISGPSFCGKGCKELFENLKKYLGSKHDLEAGFAWSLIHRTVEESEAASRGISQRVESNSKLAVALSVMDECFLPVVDRRSGISLIHNVLYNSGSNFSRLNYSGFYTAILEQGDDIISAASIRFHGTKLVEMPFIGTRHIYRRQGMCRRLFSAIESALCSLKVEKLVIPAIAELMNTWTTIFGFTHLEESLRQEMRSLNMLIFPGIDMLQKLLVKQEKLEGKTTSTGFQQMENGDKLTSVTPCMENRRDIDSSAQQDPRGSDDADSNPTNETADECSDASQELNNQASVDRTSCSKSHSREKLAGSASERCVSPSSNSNGVLEVENKVVSTSLAKENLHHYPKCQFILPNDTSVTSHPLDAPDNLENPALVQGAALSNSDSAENLVEPVSDWKCHSPTAMNCASVLECIPFSDSHVVDNDLPSKEVDMINAHEVLEAVPSEDLSEENNTKGINETDISGSTLNQVDASSSIIRSDLNGKTAYEGENNLYVGTEVSSSVMHSHGSGVNASTDSSEMDLL 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2468 1321 ProSiteProfiles Zinc finger PHD-type profile. 713 758 IPR019787 -
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 1244 1263 - -
Glsi12g2468 1321 PANTHER PHD FINGER PROTEIN 12 362 1128 IPR042163 GO:0003714|GO:0045892
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 1026 1052 - -
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 47 77 - -
Glsi12g2468 1321 Pfam Tify domain binding domain 638 688 IPR032308 -
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 473 529 - -
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 261 388 - -
Glsi12g2468 1321 SUPERFAMILY FYVE/PHD zinc finger 705 761 IPR011011 -
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 1026 1122 - -
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 304 332 - -
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 504 529 - -
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 1302 1321 - -
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 1062 1096 - -
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 1245 1263 - -
Glsi12g2468 1321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 704 769 IPR013083 -
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 348 388 - -
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 482 503 - -
Glsi12g2468 1321 CDD PHD2_CHD_II 716 755 - -
Glsi12g2468 1321 ProSitePatterns Zinc finger PHD-type signature. 716 755 IPR019786 -
Glsi12g2468 1321 MobiDBLite consensus disorder prediction 261 286 - -
Glsi12g2468 1321 Pfam PHD-finger 716 758 IPR019787 -
Glsi12g2468 1321 SMART PHD_3 757 816 IPR001965 -
Glsi12g2468 1321 SMART PHD_3 715 756 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2468 Glsi-ChrGlsi12 38666065 38673037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2468 1 1017 PHD Transcription Factor Family AT4G14920 49.759 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi12g2468 TDBD 1.4e-21 No_clan