Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2439 ATGCCATTGCCGGAGGAGGGTAAAGGCAAATTGATGCGTCAGAAGTATTCAATTGCATTTATGTTGCTGGACATGGTATCAAATAATGATAGTTATATTCTTGAACTCTACATCGTAAAATGTCTGCAAGATTTTACAGCTACACTGCAGAAATTGCGGTGTATGACGAGACTTGATGGTGCCAATGCGCATATTGCTGTCATGACTGATGTCTCTGAACTCTTCAGAGCTACTACTTTTGGATATAAGTCAGATGAGGAACGATCAGTCATAGGAGAAAAGGCAGAAATAGGATTTCTAGATTTTGAGGAAGAGAAATCTGTTTGTAGTTATATTCCTAACGAAGAGGATCCAATCGTCATATCTGTCCCATTTGCATTTGTGGATGGGAAACCTCGATCAGTATCTGTTGGAGATACTGCTGTAGATTTAATAACCGTTAAGAACACTACAGATGAACCAGTGGAACTGTGGAGTGTCCATATTTTTGCTTCAAATCCGCAGGACTGTTTCACACTTTCTCTGATGGAACCTCCATCAGCAAATTCAAATGCAGATAGTGTTCAAGGCTTTTTAGATTCTTTCTCTTTGGAGGACAGGGTGCTTCAGCCTGGTGAGATCTTGAAAATATGGTTGTCTTGCAAAACAAAGGAAATGGGAATGCACACATCGGTTGTGTATTTTGATACAGGAGATGAAAGGATAGAAAGATTGGTTTTCCTCTTAGTTGAAGATAAGATCTCCAAGTCTTTGGCTTCTAAAAAACCTTATTCAAAAGGAAGAAGAAAAGACAAATTTATTGTGGATACTTTTGTTCCTGGTTCACAACCTGCAAGGAAAGCAAATCGCGGATACAAAAATAGGCTTCCACGATATGACATTCCCAAGGACATAAGAGATTTACTTGAGAGCAAGAAGATCCCTCAAGCTATTGAAGGAGGTCTTACAAGAAAGAATTATGCATCTTATTTCAAAACATTAGTGATGATGGAAGAAATACAATTGGAGGAAGATATGAGGAGTTATGATATGGAATGCGTAACTATGAGAAAGAGGACAAGTCAGTTCTTGTCCATGGAGGTTCCAGGGCTTGCTGAGAGAAGGCCATCACTGGTTCATGGTGATTTTATTCTTGCCAAGCCAGCCTGTGAACATGGTGATAGCACTATGGCAACATATCAGGGATTTATCCACCGTGTTGAGGCTGATGAAGTATTTTTGAAGTTTGATGCTCAATTTCACTTGTGCCACAAAGATGAAGATCTTTACAATGTTCACTTCACGTATAATAGGATCAATATGAGAAGATTATATCAGGCAGTTGATGCAGCAGAAAAGTTAGGAAGAGAGTTCCTATTTCCACATGAGACATCTAGAAGGAGGCTTGTTGAAATCACTAATCTGGTGCCCATATCCGGTATTCTTAATGAGGAGCAGATGTTTTCAATCAAGAAGGTTCTTGGTTGCAAAGGTGCACCACCATATGTGATTCATGGCCCTCCAGGTACAGGAAAGACTAGTACAATTGTAGAAGCAGTCCTCCAACTCTACAAAAATCGTAGAAATGCTTGTATTCTTGTTTGTGCACCCTCAAATAGTGCAGCAGACTACATCCTGGAGAAACTCCTTGATCAAAAGGCTGTTAAATTTCAAGATAATGAAATATTCAGGCTCAATGCATCTACGAGGCCTTATGAGGATGTCAAACCTGAACTTATGCGCTTCTGCTTCTTTGATGATTGTATATTCAAGTGTCCTTCAGTCAGTGACCTCATGCATTATAGGATCATAGTATCGACTTATATGAGTGCCACCTTTCTTTATGCAGAAGATGTTGTCCGCGGCCATTTCTCGCACATTTTCTTGGATGAGGCTGGCCAAGCTTCAGAACCAGAAACCATGATCCCTATATCCCATCTCTGCACAAGGGACACTGTTGTCATTCTAGCTGGAGACCCAATGCAATTGGGTCCAGTAATATATTCCAAGGAAGCAGAAGAATATGGATTGGGGAAATCATACTTGGAAAGATTGTTTGAATGCAAATTATACTCCTACGGAGATGAAAACTACGTAACCAAATTGGTTAGAAACTACAGATGTCACCCAGAAATTTTATATCTCCCTAACAAGCTGTTCTATGATGGAGAATTGATTGCATGTAAAGACGACACAAGTTCTTTCCTGTTGAGTGCAGACTTACTCCCCCATAAGGAGTTCCCAGTTCTTTTCTTTGGCATCCAAGGATGTGATGAAAGAGAAGGGAATAATCCATCATGGTTCAACAGGATAGAAGTAAGTAAAGTAATAGAAGTAGTCAAGAGGCTGACAGCAAGTGGGAATATGACGGAGGAAGACATTGGGATAATAACACCATATAGGCAACAAGTGCTCAAAATAAAACAGACACTTGAAAGTCTAGATTTGCCAGAAATTAAGGTTGGAAGTGTAGAGCAGTTTCAGGGACGGGAGAAACGAGTTATTATAATATCAACTGTTCGTTCTACAATCAAACATAATGAATTTGATAGATTGCACTGTTTAGGATTCTTGAGCAATCATCGAAGATTTAATGTAGCTATAACCCGCGCCATATCATTGTTGGTTATAATTGGAAATCCGCACATAATCTCCAAGGACTATTATTGGCACCAACTCTTGTGGTATTGTGCGGACAATTCATCTTATCTGGGTTGTGCTCTTCCTGAAAGACTGGAGCCTTCTGATGAGTATACTGGAGAGGAGTATACTGGAGAGGAGTCTGGCTCCAACAATTTTCAAGAAAACTCATTTCCCTTAGAAAATGAGGCATATGGTCAGGATTCATCACAATCAGAGTTCCCTAAACCTGTTACAGATGAAGCTGAATGGTCTGATGGTTGGAAATAA 2889 0.3981 MPLPEEGKGKLMRQKYSIAFMLLDMVSNNDSYILELYIVKCLQDFTATLQKLRCMTRLDGANAHIAVMTDVSELFRATTFGYKSDEERSVIGEKAEIGFLDFEEEKSVCSYIPNEEDPIVISVPFAFVDGKPRSVSVGDTAVDLITVKNTTDEPVELWSVHIFASNPQDCFTLSLMEPPSANSNADSVQGFLDSFSLEDRVLQPGEILKIWLSCKTKEMGMHTSVVYFDTGDERIERLVFLLVEDKISKSLASKKPYSKGRRKDKFIVDTFVPGSQPARKANRGYKNRLPRYDIPKDIRDLLESKKIPQAIEGGLTRKNYASYFKTLVMMEEIQLEEDMRSYDMECVTMRKRTSQFLSMEVPGLAERRPSLVHGDFILAKPACEHGDSTMATYQGFIHRVEADEVFLKFDAQFHLCHKDEDLYNVHFTYNRINMRRLYQAVDAAEKLGREFLFPHETSRRRLVEITNLVPISGILNEEQMFSIKKVLGCKGAPPYVIHGPPGTGKTSTIVEAVLQLYKNRRNACILVCAPSNSAADYILEKLLDQKAVKFQDNEIFRLNASTRPYEDVKPELMRFCFFDDCIFKCPSVSDLMHYRIIVSTYMSATFLYAEDVVRGHFSHIFLDEAGQASEPETMIPISHLCTRDTVVILAGDPMQLGPVIYSKEAEEYGLGKSYLERLFECKLYSYGDENYVTKLVRNYRCHPEILYLPNKLFYDGELIACKDDTSSFLLSADLLPHKEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVIEVVKRLTASGNMTEEDIGIITPYRQQVLKIKQTLESLDLPEIKVGSVEQFQGREKRVIIISTVRSTIKHNEFDRLHCLGFLSNHRRFNVAITRAISLLVIIGNPHIISKDYYWHQLLWYCADNSSYLGCALPERLEPSDEYTGEEYTGEESGSNNFQENSFPLENEAYGQDSSQSEFPKPVTDEAEWSDGWK 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2439 962 CDD DEXXQc_Helz-like 475 700 IPR026122 GO:0003723|GO:0032574
Glsi12g2439 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 887 IPR027417 -
Glsi12g2439 962 Pfam AAA domain 594 663 IPR041677 GO:0004386
Glsi12g2439 962 Pfam AAA domain 475 570 IPR041677 GO:0004386
Glsi12g2439 962 Gene3D - 699 902 IPR027417 -
Glsi12g2439 962 CDD SF1_C_Upf1 701 890 IPR047187 -
Glsi12g2439 962 PANTHER CANCER/TESTIS ANTIGEN 55 196 457 - -
Glsi12g2439 962 Gene3D - 391 686 IPR027417 -
Glsi12g2439 962 MobiDBLite consensus disorder prediction 909 962 - -
Glsi12g2439 962 MobiDBLite consensus disorder prediction 917 949 - -
Glsi12g2439 962 FunFam Probable RNA helicase SDE3 700 899 - -
Glsi12g2439 962 FunFam Probable RNA helicase SDE3 424 569 - -
Glsi12g2439 962 Pfam AAA domain 671 874 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2439 Glsi-ChrGlsi12 38531634 38540578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2439 475 631 Core DNA Replication Machinery Family AT1G08840 32.500 1.92e-08 56.6