Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Glsi12g2420 | ATGGGTTGCAAAATATTTTGCAATATAAGAAATTACGATATTGATCGGAATCTTCAAATTGGCAAATTGGCTTTCAACGAGATTAGGGATTTTGGGTCTAGAATTTGGAAGAATTGGGTCGCGTACGAAGCTTGCCGATGTAGAGGGGGTCTTCCCGTCCATGTTCATACCATTCTCTACATCTTCCCCCCCCCCCCACCAAATGAAGCTCATGTCATTCTCCAAGCCATTCCATCTGTAAAACTTGTGGCTTTTGGACTATTCCTTTTATACTTTATTCTTTCATCCTATGACCTCTGGGTCTGGGGGTATATCCTCTTTTTGTTGTTGACGGATGCAATTTCTGCTGTTTTGGCTGCATTTGTGTATGATCAATATAAAAAACAGAATATGGAGGACATGGAAATTGATCAAATTGTGGATGTTCCTGATACTCCTGATAGATTAACTACTAGGCATGTTGGTCGCAAATATGTTGGTAATCCTGATGTTTTTGTGAATGAGAAGAGGGAGAGGGGTTTTCCTGTTGCTGAAAATGGTAAGGATAGAAGATTGGGTTTTTGTCCTCCAAAGAATTTTAATGGTGGTGAAATGAATAACTGCAGCAGTCACATAGCAGTATCGCCATCAAAGAAATCTTATGCCCCTCAAAATGCTCCCATATTTAGGAGAACCCAAACTGACAAATACTTCAGTCATGACTCAATACACACTAATGGATCTGAAAAGATGGAGAAAGGGAAAGCTATATGCACCAAGTTTCCTTCTAAATCAATGTCTCGTGGGGGTGTTGCTGTTTTTGATTTGACTGAAGGGAATGGACAGCCCCAAAAACTCGAACCGGTTTTCTCACATCATGGGTCTAAAGATAGTGCATCTGAATACAAGAAAGACCTGAAAGTAAGTGTTGGGAACTCTCCTATACCTTGCATCCATGATTCTTCAAATACATCTAGCAATACTTTTGCAGGAAAGTGTAAAATAGATGATACAATACTTCCTTGTTCTAATATATCTGTGGATCGTGGAAAGAGCATTGATTTGTCTAGTGATTCTCAGCAAAAAACTGAAAAGCAAACATCTTTGCCTCCTCGTTTTTTATCTGCTCCTAGATTCAGTGGCCAAAAGAGATTGGTACGGAATGGGTGTATTTCACCACTTAATATTGCAGCCAGGGCAAAACAAGCAACTGAACATAGCAGTCAGAGGACCAGTGATGTTGAACAGAGTCATGCTGGGGATGCTGTTTCTATTGGTTCAGGGTCTCCAGTCAGTATTAATGATATAGTTGCTGAAGAGAGAGGTAGCAGCAGAGTGAAAGGAAAAGAATTACTTACCCATTATTCTTCATCAAGTGCACATGATGCTGGAACTATCAACAAAGTTAGCAGCAGCCCTGTGATCGATTATGAAGAGGCCAATGATACCAATAATGTTATGAGAAATTCAATTAAATGCTCTGGGGGACCAGGTGGCTGGAGAACTACGCGTAACCACAGGATCAATGGTCATTCCTTGCATGATGTAACTGGGCATCGTTTGAGGAGAAATAATGATGCTGAAAACTTTATTAGTACACAATATAGGAACAGAGTGGACAGAAGAGACACTGGAAGCAGTCAAAGCAGTAAGGAAGTACGTTATCCTCTAGAAGATCATGCAGTTGATGCAACTTCTCTGATCATTCCAGAGGCAGACCAGTCAACTGCACCTTGTCCTCCAGCAGACAAACTGACTAAAAGGCAAAGGAAAAATGGATCAACTTCGAGCAATCCTAATTCAGAGATTATCTTCCTTGATTTACTTGGGGAATCATCAAATCCAAGCTCGTCCAGAACCTCTGTCTTGGATACTGAAGTGGTTGAGCTATCACCTGAAACAAGATATACCAACAGAGTGTCTCATGATTTAGATGACATGCCCAATGATGACTCAGATGCTTTGGCAAGACAGGTAGAAGCAGATGAGATATTGGCACGTGAACTCCAAGAACAACTATATCATGAGGATTCTTTTGATCGCGTAGAGATTGATGAACATTTAGCATGGGAGTTGCAACATGAGGAGGAGTTTCTGCATACATCAATTGATAGTCATCAGACATCAAATCCTAGATGGTTATCAAGGGCACCCTCAAATAGACAGCCCCGTTCACGGCCTCATCAAAGTCTTACAAATAGAAGGAGAGCTGTGCCTCATGTTCCTCCCTCTAATAGAGTGTCACAGTTGAGGAATCGCATTGTAAGTCGGTCTCCAACACCTAACATCTCAACTAGAGGAAGGCGCCTTCGGTTTCCTGTGGATATGGACTTTGACATGAGACTTGATATATTGGAAGCATTAGAGGATGCAGTAGGGGATCTTAGTGACTTGGGAGTTGCTGATGACATCTTTCAAGCTCATCGTGATTTCAATGAAAATGATTATGAAATGTTATTGGCCCTTGATGAGAACAATCATCAACATGCTGGTGCATCTACCAATCAGATCAATTGTTTGCCGCAGTCCACTGTGCAGACTGACAACTTCGAAGAGGCATGCGCCATATGTCTTGAGACCCCAGTTATGGGAGATACCATTCGCCATCTTCCTTGTTTACACAAATTTCACAAAGATTGTATTGATCCTTGGCTCCATAGGAGGACATCGTGCCCAGTGTGCAAGTCATCTATTACCTAA | 2679 | 0.4147 | MGCKIFCNIRNYDIDRNLQIGKLAFNEIRDFGSRIWKNWVAYEACRCRGGLPVHVHTILYIFPPPPPNEAHVILQAIPSVKLVAFGLFLLYFILSSYDLWVWGYILFLLLTDAISAVLAAFVYDQYKKQNMEDMEIDQIVDVPDTPDRLTTRHVGRKYVGNPDVFVNEKRERGFPVAENGKDRRLGFCPPKNFNGGEMNNCSSHIAVSPSKKSYAPQNAPIFRRTQTDKYFSHDSIHTNGSEKMEKGKAICTKFPSKSMSRGGVAVFDLTEGNGQPQKLEPVFSHHGSKDSASEYKKDLKVSVGNSPIPCIHDSSNTSSNTFAGKCKIDDTILPCSNISVDRGKSIDLSSDSQQKTEKQTSLPPRFLSAPRFSGQKRLVRNGCISPLNIAARAKQATEHSSQRTSDVEQSHAGDAVSIGSGSPVSINDIVAEERGSSRVKGKELLTHYSSSSAHDAGTINKVSSSPVIDYEEANDTNNVMRNSIKCSGGPGGWRTTRNHRINGHSLHDVTGHRLRRNNDAENFISTQYRNRVDRRDTGSSQSSKEVRYPLEDHAVDATSLIIPEADQSTAPCPPADKLTKRQRKNGSTSSNPNSEIIFLDLLGESSNPSSSRTSVLDTEVVELSPETRYTNRVSHDLDDMPNDDSDALARQVEADEILARELQEQLYHEDSFDRVEIDEHLAWELQHEEEFLHTSIDSHQTSNPRWLSRAPSNRQPRSRPHQSLTNRRRAVPHVPPSNRVSQLRNRIVSRSPTPNISTRGRRLRFPVDMDFDMRLDILEALEDAVGDLSDLGVADDIFQAHRDFNENDYEMLLALDENNHQHAGASTNQINCLPQSTVQTDNFEEACAICLETPVMGDTIRHLPCLHKFHKDCIDPWLHRRTSCPVCKSSIT | 892 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Glsi12g2420 | 892 | MobiDBLite | consensus disorder prediction | 528 | 547 | - | - | |
Glsi12g2420 | 892 | PANTHER | SI:CH211-59O9.10 | 564 | 892 | - | - | |
Glsi12g2420 | 892 | SUPERFAMILY | RING/U-box | 839 | 891 | - | - | |
Glsi12g2420 | 892 | MobiDBLite | consensus disorder prediction | 346 | 371 | - | - | |
Glsi12g2420 | 892 | MobiDBLite | consensus disorder prediction | 517 | 547 | - | - | |
Glsi12g2420 | 892 | Coils | Coil | 645 | 665 | - | - | |
Glsi12g2420 | 892 | MobiDBLite | consensus disorder prediction | 561 | 593 | - | - | |
Glsi12g2420 | 892 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 813 | 892 | IPR013083 | - | |
Glsi12g2420 | 892 | SMART | ring_2 | 847 | 887 | IPR001841 | - | |
Glsi12g2420 | 892 | MobiDBLite | consensus disorder prediction | 346 | 363 | - | - | |
Glsi12g2420 | 892 | MobiDBLite | consensus disorder prediction | 695 | 741 | - | - | |
Glsi12g2420 | 892 | MobiDBLite | consensus disorder prediction | 394 | 423 | - | - | |
Glsi12g2420 | 892 | CDD | RING-H2_PA-TM-RING | 847 | 888 | - | - | |
Glsi12g2420 | 892 | ProSiteProfiles | Zinc finger RING-type profile. | 847 | 888 | IPR001841 | - | |
Glsi12g2420 | 892 | MobiDBLite | consensus disorder prediction | 696 | 720 | - | - | |
Glsi12g2420 | 892 | MobiDBLite | consensus disorder prediction | 626 | 645 | - | - | |
Glsi12g2420 | 892 | Pfam | Ring finger domain | 846 | 888 | IPR001841 | - | |
Glsi12g2420 | 892 | MobiDBLite | consensus disorder prediction | 629 | 645 | - | - | |
Glsi12g2420 | 892 | FunFam | RING/U-box superfamily protein | 812 | 892 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Glsi12g2420 | Glsi-ChrGlsi12 | 38357590 | 38370298 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Glsi12g2420 | 131 | 892 | C3H Transcription Factor Family | AT1G04790 | 33.248 | 2.92e-87 | 290 |