Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2420 ATGGGTTGCAAAATATTTTGCAATATAAGAAATTACGATATTGATCGGAATCTTCAAATTGGCAAATTGGCTTTCAACGAGATTAGGGATTTTGGGTCTAGAATTTGGAAGAATTGGGTCGCGTACGAAGCTTGCCGATGTAGAGGGGGTCTTCCCGTCCATGTTCATACCATTCTCTACATCTTCCCCCCCCCCCCACCAAATGAAGCTCATGTCATTCTCCAAGCCATTCCATCTGTAAAACTTGTGGCTTTTGGACTATTCCTTTTATACTTTATTCTTTCATCCTATGACCTCTGGGTCTGGGGGTATATCCTCTTTTTGTTGTTGACGGATGCAATTTCTGCTGTTTTGGCTGCATTTGTGTATGATCAATATAAAAAACAGAATATGGAGGACATGGAAATTGATCAAATTGTGGATGTTCCTGATACTCCTGATAGATTAACTACTAGGCATGTTGGTCGCAAATATGTTGGTAATCCTGATGTTTTTGTGAATGAGAAGAGGGAGAGGGGTTTTCCTGTTGCTGAAAATGGTAAGGATAGAAGATTGGGTTTTTGTCCTCCAAAGAATTTTAATGGTGGTGAAATGAATAACTGCAGCAGTCACATAGCAGTATCGCCATCAAAGAAATCTTATGCCCCTCAAAATGCTCCCATATTTAGGAGAACCCAAACTGACAAATACTTCAGTCATGACTCAATACACACTAATGGATCTGAAAAGATGGAGAAAGGGAAAGCTATATGCACCAAGTTTCCTTCTAAATCAATGTCTCGTGGGGGTGTTGCTGTTTTTGATTTGACTGAAGGGAATGGACAGCCCCAAAAACTCGAACCGGTTTTCTCACATCATGGGTCTAAAGATAGTGCATCTGAATACAAGAAAGACCTGAAAGTAAGTGTTGGGAACTCTCCTATACCTTGCATCCATGATTCTTCAAATACATCTAGCAATACTTTTGCAGGAAAGTGTAAAATAGATGATACAATACTTCCTTGTTCTAATATATCTGTGGATCGTGGAAAGAGCATTGATTTGTCTAGTGATTCTCAGCAAAAAACTGAAAAGCAAACATCTTTGCCTCCTCGTTTTTTATCTGCTCCTAGATTCAGTGGCCAAAAGAGATTGGTACGGAATGGGTGTATTTCACCACTTAATATTGCAGCCAGGGCAAAACAAGCAACTGAACATAGCAGTCAGAGGACCAGTGATGTTGAACAGAGTCATGCTGGGGATGCTGTTTCTATTGGTTCAGGGTCTCCAGTCAGTATTAATGATATAGTTGCTGAAGAGAGAGGTAGCAGCAGAGTGAAAGGAAAAGAATTACTTACCCATTATTCTTCATCAAGTGCACATGATGCTGGAACTATCAACAAAGTTAGCAGCAGCCCTGTGATCGATTATGAAGAGGCCAATGATACCAATAATGTTATGAGAAATTCAATTAAATGCTCTGGGGGACCAGGTGGCTGGAGAACTACGCGTAACCACAGGATCAATGGTCATTCCTTGCATGATGTAACTGGGCATCGTTTGAGGAGAAATAATGATGCTGAAAACTTTATTAGTACACAATATAGGAACAGAGTGGACAGAAGAGACACTGGAAGCAGTCAAAGCAGTAAGGAAGTACGTTATCCTCTAGAAGATCATGCAGTTGATGCAACTTCTCTGATCATTCCAGAGGCAGACCAGTCAACTGCACCTTGTCCTCCAGCAGACAAACTGACTAAAAGGCAAAGGAAAAATGGATCAACTTCGAGCAATCCTAATTCAGAGATTATCTTCCTTGATTTACTTGGGGAATCATCAAATCCAAGCTCGTCCAGAACCTCTGTCTTGGATACTGAAGTGGTTGAGCTATCACCTGAAACAAGATATACCAACAGAGTGTCTCATGATTTAGATGACATGCCCAATGATGACTCAGATGCTTTGGCAAGACAGGTAGAAGCAGATGAGATATTGGCACGTGAACTCCAAGAACAACTATATCATGAGGATTCTTTTGATCGCGTAGAGATTGATGAACATTTAGCATGGGAGTTGCAACATGAGGAGGAGTTTCTGCATACATCAATTGATAGTCATCAGACATCAAATCCTAGATGGTTATCAAGGGCACCCTCAAATAGACAGCCCCGTTCACGGCCTCATCAAAGTCTTACAAATAGAAGGAGAGCTGTGCCTCATGTTCCTCCCTCTAATAGAGTGTCACAGTTGAGGAATCGCATTGTAAGTCGGTCTCCAACACCTAACATCTCAACTAGAGGAAGGCGCCTTCGGTTTCCTGTGGATATGGACTTTGACATGAGACTTGATATATTGGAAGCATTAGAGGATGCAGTAGGGGATCTTAGTGACTTGGGAGTTGCTGATGACATCTTTCAAGCTCATCGTGATTTCAATGAAAATGATTATGAAATGTTATTGGCCCTTGATGAGAACAATCATCAACATGCTGGTGCATCTACCAATCAGATCAATTGTTTGCCGCAGTCCACTGTGCAGACTGACAACTTCGAAGAGGCATGCGCCATATGTCTTGAGACCCCAGTTATGGGAGATACCATTCGCCATCTTCCTTGTTTACACAAATTTCACAAAGATTGTATTGATCCTTGGCTCCATAGGAGGACATCGTGCCCAGTGTGCAAGTCATCTATTACCTAA 2679 0.4147 MGCKIFCNIRNYDIDRNLQIGKLAFNEIRDFGSRIWKNWVAYEACRCRGGLPVHVHTILYIFPPPPPNEAHVILQAIPSVKLVAFGLFLLYFILSSYDLWVWGYILFLLLTDAISAVLAAFVYDQYKKQNMEDMEIDQIVDVPDTPDRLTTRHVGRKYVGNPDVFVNEKRERGFPVAENGKDRRLGFCPPKNFNGGEMNNCSSHIAVSPSKKSYAPQNAPIFRRTQTDKYFSHDSIHTNGSEKMEKGKAICTKFPSKSMSRGGVAVFDLTEGNGQPQKLEPVFSHHGSKDSASEYKKDLKVSVGNSPIPCIHDSSNTSSNTFAGKCKIDDTILPCSNISVDRGKSIDLSSDSQQKTEKQTSLPPRFLSAPRFSGQKRLVRNGCISPLNIAARAKQATEHSSQRTSDVEQSHAGDAVSIGSGSPVSINDIVAEERGSSRVKGKELLTHYSSSSAHDAGTINKVSSSPVIDYEEANDTNNVMRNSIKCSGGPGGWRTTRNHRINGHSLHDVTGHRLRRNNDAENFISTQYRNRVDRRDTGSSQSSKEVRYPLEDHAVDATSLIIPEADQSTAPCPPADKLTKRQRKNGSTSSNPNSEIIFLDLLGESSNPSSSRTSVLDTEVVELSPETRYTNRVSHDLDDMPNDDSDALARQVEADEILARELQEQLYHEDSFDRVEIDEHLAWELQHEEEFLHTSIDSHQTSNPRWLSRAPSNRQPRSRPHQSLTNRRRAVPHVPPSNRVSQLRNRIVSRSPTPNISTRGRRLRFPVDMDFDMRLDILEALEDAVGDLSDLGVADDIFQAHRDFNENDYEMLLALDENNHQHAGASTNQINCLPQSTVQTDNFEEACAICLETPVMGDTIRHLPCLHKFHKDCIDPWLHRRTSCPVCKSSIT 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2420 892 MobiDBLite consensus disorder prediction 528 547 - -
Glsi12g2420 892 PANTHER SI:CH211-59O9.10 564 892 - -
Glsi12g2420 892 SUPERFAMILY RING/U-box 839 891 - -
Glsi12g2420 892 MobiDBLite consensus disorder prediction 346 371 - -
Glsi12g2420 892 MobiDBLite consensus disorder prediction 517 547 - -
Glsi12g2420 892 Coils Coil 645 665 - -
Glsi12g2420 892 MobiDBLite consensus disorder prediction 561 593 - -
Glsi12g2420 892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 813 892 IPR013083 -
Glsi12g2420 892 SMART ring_2 847 887 IPR001841 -
Glsi12g2420 892 MobiDBLite consensus disorder prediction 346 363 - -
Glsi12g2420 892 MobiDBLite consensus disorder prediction 695 741 - -
Glsi12g2420 892 MobiDBLite consensus disorder prediction 394 423 - -
Glsi12g2420 892 CDD RING-H2_PA-TM-RING 847 888 - -
Glsi12g2420 892 ProSiteProfiles Zinc finger RING-type profile. 847 888 IPR001841 -
Glsi12g2420 892 MobiDBLite consensus disorder prediction 696 720 - -
Glsi12g2420 892 MobiDBLite consensus disorder prediction 626 645 - -
Glsi12g2420 892 Pfam Ring finger domain 846 888 IPR001841 -
Glsi12g2420 892 MobiDBLite consensus disorder prediction 629 645 - -
Glsi12g2420 892 FunFam RING/U-box superfamily protein 812 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2420 Glsi-ChrGlsi12 38357590 38370298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2420 131 892 C3H Transcription Factor Family AT1G04790 33.248 2.92e-87 290