Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2418 ATGGAACGATTTCCTCTCGCTCTCTCTTTCTCTCTCAAGCCTTACCTCACAAACAAACCCGCTTTCTGGTTTCAACAAAACCCAAACTCAAACTCCATTTTTCTCTTTCCCTTGCTTCCTCCAAACCCATTCCAAAAGCTTGCATTCCCTTTACACCAATCTCCCCAGCTTAATTTTCATGCTTTTAGAGGATTTAAGGACAAACAAACAGGTACATCAAGCCAGCAATGTAAAGGCGCAATGGCTGCTGGTTTTAGCGATAGAATCCCTTCAGACAGCAATGAAGACAATATATGTGCACAGACAGGTGAAGAATTTTCAGCTGAGTTCTTACGGGATCGGGCTGCTTTAAGGAGACTGCCTATCATAACTGATATGGATAATCACCTGCCAAATAGATTGGGTTTGGATTATAATCAGAATTATCAGCTGGCTTATGAGGATCTTGCACGCATTCTTGGGCTAAGGAGAATGGATTCTGATAGTAACTCAGATTTGTCAGATATTGGTTCAGCAGCAGGATATGTTGCTGAACAAGAAAACAGGGCTTACCCTAACAATTTGAGCAGATACCAGTACGAACATGGAAGTATTGGACAAGTATCAGGTAAATTTGCTGAAGAAATTTATTCTGATCGATTTGCTTCAGGACCAACTGCTCCACCCATTCATGTAGTTGAGTCCCCTCAGGCATGCCATCCTTATGGATCATCATTTTCAGAAGCTTCTTTTCCTAAGAAGATAAAGTTTCTCTGTAGCTTTGGAGGAAGAATATTACCAAGGCCAAATGATGGGAAGCTCAGATATGTAGGTGGAGAGACACGGATTATATCCATCAGGAAAAACATTACTTGGGAGCATCTTATGGGGAAGACTTACGCAATTTGCAATCAAACTCACGTTATCAAGTACCAGCTTCCTGGAGAGGATCTTGATGCTCTTATTTCTGTTTGTTCTGATGAGGATCTTCATCATATGATCGAGGAGTATGAAGAGCTGGAACGAACTGGAGGCTCTCAACGATTGCGGATTTTCCTCATATCTTCAAATGAATCTGAGAGCCCGAATTCTATTGAAGCTAGAGTCAATCAACCAAGCGATGCTGATTATCAGTATGTTGTAGCTGTTAATGGAATGCTGGATCCAAGTCCACGGAAAAGCTCCAGTGGGCAGAGTCTGGCAAGCCAAACAAGCCAGTTAGGAAATGCCTCTGATTATAACAGTCCGAGTTTCATTAAGGAATCTCCTACGTCTGCATTTGCCTGGGATATGAAGGATCGCAGCCCAAGGTCCCCATGTTTAGGAGGATTTTTGTCAAAACCTGGTCCTCAGTTTTTAACAACACTTCAAGTGGCAGGCAAGTCATTGAATCAATCACCATCTATACCTAAAATCTCCAATGCAGAGCTATTTATGGATCAACCATGCAATGTTGGTAATGAAAGCATTTTTCCCTTTGTAATGGAAAGAGTTCAATGTGACAACTCCTTATATAGAGACAATACCAATTATGTTGATCCCACTGCATACTATAACAATCTTGCTCAAGGACCTCCCTTTGTGAATTACCATCATAATAATCAAAATATAGTGGAGGCTTATCAGCCCAAGAATCCCACTGATGATGTTCAATTTCACATAAGAAGCCACAGTGAAGATTTTGTCTCTTCGGCAATGTGTGGTCAAATTGATATGATATTTGAGAGACCCGCACGTACAAATGAAGGTACATACCATCTCAACAAGGTCGTCTCTCATCCTGTAGAGTCATCAGGTTTAATTTCAGTGTCTAATAATAGAGATAGAGAGAGATCTCATAACAGAATGATGCATGCACTTTCAGAACCATTATTGCAGAAGAATGATGAGAGCTCTAAAGATAACTTGCAGCCCTCCCTGCGGGTAAAGGTAGAAAAATCACCTTCACTGAAAATTTCATGTTCCTTTCGGGAGAGGCCATTGCTGCAGGGAGAGACAATTGGCAGTAAAGACCAGGTGGCCAAGTATCAAATTCTGCCCAGTTATGGAAGGTCTTACAGTTGCAAGGGGATGACGGATCCTGGTCAAGAGAGCTTGCTCTGTGCAGATAGTAACAATGCTTGCTCTGATGAAATTGGAAGATACTTTGAAGGAAATATTGAAGCTTCGTCTCATGACAATGCCTTGGATATTAGAAATTTAGAGTACATAAACTACCAACAAGGTGCTTGCTCATCTTCACAAGAGTTACAAAGCAGTGAATGCAATTCATCTGTTTCCCCTTTAAATTTAGAATCCACAAGAAACCTGACGGAGCAACCACAAGGTCTGCGACTAGACATGGCTGCTTCTGAGTTTTTCATAAGAAGCCAAAATTCTTCAATGTATAACCAATATGCTATGCCGGATACAGAAAACGGCCCAACATTTTCCCTTGGCTCCTCGGATTTACATCTTATGGAGACCCAAACCGACATAGAGTCCATACTGCTAGTCTCTAATAGAGACATAGGTTCAGCTTCCAGAGGAGAGGCTTTTCTCCCTGACGAGACTCCAGCAAATTGTTTTCACCAGAAGAATGAAAAGACAGTCATTAACAACACTTCTTATGTTGAGCATAGCAACGAGTTTTGTGATCAACCACGGCGTTTTGATAGCTGTCCAGAAATTGAGAGGCTAGAACCAGTAGCTGTTGTCAAAAGACAAACTGATAGTATTTCTTCAGGCATTCAGTCATGCTCAAAAGTTGTCTCAAATGTAGATGAAGAGGTCGAAGCCGAATCTGCATCTCCTGAAAAGGAAGGAACAGGGAGTGTCAGTACAGAATCTGAAATTAGGCTTGCAAAAGCTGATTGTAGAAACTTCGATAAGCATATTGGTGCAGCAACTCCTGAAATAGAGGCTGAAATATATGGTTTGCAGATTATTAAGAATGCTGATCTTGAAGAACTGCAAGAGTTAGGATCTGGAACATTTGGAACTGTTTATCATGGAAAGTGGAGGGGAACAGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTTTCTGGCAGATTATCAGAGCAAGAGCGGTTGACTAAAGAATTCTGGCGAGAGGCACAAATTCTGTCAACTCTTCACCATCCAAACGTGGTGGCCTTTTATGGGGTAGTTCCAGATGGGCCAGGGGGAACATTGGCAACTCTTACAGAATATATGGTGCATGGATCACTGAGGAATGTCCTTTTGAGGAAGGATAGAGTGCTTGATCGTCGAAGAAGGCTTATGATTGCGATGGATGCAGCCTTCGGGATGGAATATTTGCATTTTAAGAATATTGTTCATTTTGATTTGAAGTGCGATAATTTACTTGTCAATTTGGGGGATCCTGAACGACCTGTATGCAAGGTTGGCGATTTTGGCCTGTCAAGAATTAAACGCAACACACTGGTTTCTGGTGGTGTCAGAGGAACCCTTCCCTGGATGGCACCGGAATTATTAGATGGTAACAGTAGTGGGGTCTCTGAGAAGGTGGATGTTTTCTCATTTGGCATTGCAATGTGGGAAATCTTGACTGGGGAAGAGCCGTATGCTAACATGCACTGTGGTGCTATCATAGGAGGGATTGTGAATAATACACTCAGGCCTTGTATTCCAAAACGTTGTGACGGTGAGTGGAAAAAGTTGATGGAAGAGTGCTGGAGTCCTGATCCTGCAGCCAGGCCATCCTTCACAGAAATAACAGATAGATTTCGCATAATGTCAGCCGCACTGCAGAAAAAGAGACACAAGCTTGCAAATCGATAA 3765 0.4191 MERFPLALSFSLKPYLTNKPAFWFQQNPNSNSIFLFPLLPPNPFQKLAFPLHQSPQLNFHAFRGFKDKQTGTSSQQCKGAMAAGFSDRIPSDSNEDNICAQTGEEFSAEFLRDRAALRRLPIITDMDNHLPNRLGLDYNQNYQLAYEDLARILGLRRMDSDSNSDLSDIGSAAGYVAEQENRAYPNNLSRYQYEHGSIGQVSGKFAEEIYSDRFASGPTAPPIHVVESPQACHPYGSSFSEASFPKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKNITWEHLMGKTYAICNQTHVIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERTGGSQRLRIFLISSNESESPNSIEARVNQPSDADYQYVVAVNGMLDPSPRKSSSGQSLASQTSQLGNASDYNSPSFIKESPTSAFAWDMKDRSPRSPCLGGFLSKPGPQFLTTLQVAGKSLNQSPSIPKISNAELFMDQPCNVGNESIFPFVMERVQCDNSLYRDNTNYVDPTAYYNNLAQGPPFVNYHHNNQNIVEAYQPKNPTDDVQFHIRSHSEDFVSSAMCGQIDMIFERPARTNEGTYHLNKVVSHPVESSGLISVSNNRDRERSHNRMMHALSEPLLQKNDESSKDNLQPSLRVKVEKSPSLKISCSFRERPLLQGETIGSKDQVAKYQILPSYGRSYSCKGMTDPGQESLLCADSNNACSDEIGRYFEGNIEASSHDNALDIRNLEYINYQQGACSSSQELQSSECNSSVSPLNLESTRNLTEQPQGLRLDMAASEFFIRSQNSSMYNQYAMPDTENGPTFSLGSSDLHLMETQTDIESILLVSNRDIGSASRGEAFLPDETPANCFHQKNEKTVINNTSYVEHSNEFCDQPRRFDSCPEIERLEPVAVVKRQTDSISSGIQSCSKVVSNVDEEVEAESASPEKEGTGSVSTESEIRLAKADCRNFDKHIGAATPEIEAEIYGLQIIKNADLEELQELGSGTFGTVYHGKWRGTDVAIKRIKSSCFSGRLSEQERLTKEFWREAQILSTLHHPNVVAFYGVVPDGPGGTLATLTEYMVHGSLRNVLLRKDRVLDRRRRLMIAMDAAFGMEYLHFKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSSGVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVNNTLRPCIPKRCDGEWKKLMEECWSPDPAARPSFTEITDRFRIMSAALQKKRHKLANR 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2418 1254 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1099 1111 IPR008271 GO:0004672|GO:0006468
Glsi12g2418 1254 Pfam PB1 domain 263 346 IPR000270 GO:0005515
Glsi12g2418 1254 Gene3D - 266 350 - -
Glsi12g2418 1254 CDD PB1_UP2 251 347 - -
Glsi12g2418 1254 Gene3D Phosphorylase Kinase; domain 1 967 1061 - -
Glsi12g2418 1254 PANTHER SERINE-THREONINE PROTEIN KINASE 314 1238 - -
Glsi12g2418 1254 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 267 349 - -
Glsi12g2418 1254 MobiDBLite consensus disorder prediction 915 935 - -
Glsi12g2418 1254 PRINTS Tyrosine kinase catalytic domain signature 1056 1069 IPR001245 GO:0004672|GO:0006468
Glsi12g2418 1254 PRINTS Tyrosine kinase catalytic domain signature 1208 1230 IPR001245 GO:0004672|GO:0006468
Glsi12g2418 1254 PRINTS Tyrosine kinase catalytic domain signature 1093 1111 IPR001245 GO:0004672|GO:0006468
Glsi12g2418 1254 PRINTS Tyrosine kinase catalytic domain signature 1164 1186 IPR001245 GO:0004672|GO:0006468
Glsi12g2418 1254 MobiDBLite consensus disorder prediction 382 409 - -
Glsi12g2418 1254 ProSiteProfiles Protein kinase domain profile. 974 1244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2418 1254 MobiDBLite consensus disorder prediction 381 409 - -
Glsi12g2418 1254 SMART serkin_6 974 1239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2418 1254 SMART PB1_new 262 349 IPR000270 GO:0005515
Glsi12g2418 1254 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 967 1061 - -
Glsi12g2418 1254 ProSitePatterns Protein kinases ATP-binding region signature. 980 1001 IPR017441 GO:0005524
Glsi12g2418 1254 SUPERFAMILY CAD & PB1 domains 263 354 - -
Glsi12g2418 1254 Gene3D Transferase(Phosphotransferase) domain 1 1062 1254 - -
Glsi12g2418 1254 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1062 1253 - -
Glsi12g2418 1254 Pfam Protein tyrosine and serine/threonine kinase 976 1236 IPR001245 GO:0004672|GO:0006468
Glsi12g2418 1254 CDD STKc_MAP3K-like 980 1237 - -
Glsi12g2418 1254 SUPERFAMILY Protein kinase-like (PK-like) 963 1235 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2418 Glsi-ChrGlsi12 38338740 38347543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2418 40 398 MAP Kinase Kinase Kinase AT1G16270 38.292 2.55e-45 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Glsi12g2418 PK_Tyr_Ser-Thr 4.4e-61 CL0016