Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2413 ATGGCAGCTTCTGGGAAATACGTCGGTGTCTGCTTGCTGGTGCTTGTAACTTTGTTCCTTGGAGCCATGGCCAGAGTACAGATCTCTGAACTCAGGAATGTCGAAGCACAGAAGCTGCAGAGCTTAACCAACTCATCAATGGCGGCAAGGGCTAAGGAGGCTGAGGCACTGAATAACCGTGCTGTGGCTGACCCAGAGGAGATTGTTTCCAATGTTGTAATGACCATCCGGAATAGCACAGAAAGGAGGAAGTTGGGATTTTTCTCGTGTGGAACCGGTAATCCCATCGATGATTGCTGGCGTTGTGACGCCGACTGGCACCGTAACCGGAAGCGCCTTGCAGACTGTGGGATTGGATTTGGAAGGAATGCCATTGGTGGCCGTGATGGTCGCTTCTACGTTGTCACTGACCCCAGAGATGATGACCCTGTTAACCCCAAGCCTGGCACTCTGCGCCATGCTGTCATCCAGGACACGCCTCTCTGGATTGTCTTCAAGCGTGACATGGTCATACAATTGAAGCAGGAGCTCATTGTGAACAGCTTCAAGACCATTGATGGTCGAGGAGCCAATGTCCACATTGCTAATGGAGGGTGCATCACTATCCAGTATGTCACAAATGTCATAATTCACGGTCTGCACATCCACGACTGCAAACCCACAGGCAATGCCATGGTGAGGAGCTCCCCCACGCACTACGGTTGGAGGACTATGGCGGACGGTGACGCAATTTCCATATTTGGCTCAAGTCACATTTGGGTCGATCACAATTCTTTGTCCCATTGCGCCGACGGCCTTGTGGACGCTGTCATGGGCTCAACTGCTATTACAATCTCCAACAACCACTTCACCCACCACAACGAGGTGATTCTGCTGGGCCACAGTGATTCTTACACAAGAGACAAGCAAATGCAAGTGACCATCGCATACAACCATTTTGGAGAGGGACTAATCCAGAGAATGCCACGGTGTAGGCATGGATATTTCCACGTAGTGAACAATGACTACACTCACTGGGAGATGTATGCCATTGGTGGAAGTGCAAGCCCCACCATCAACAGTCAGGGAAATAGATACAATGCTCCACTTAACCCCTTTGCCAAGGAGGTGACAAAGAGAGTGGAAACAGCTGCTACCGAGTGGAAGGGTTGGAATTGGAGGTCAGAGGGAGATCTGTTGCTGAATGGTGCTTATTTCACACCATCTGGAGCCGGAGCTTCAGCCAGCTATGCCAGGGCCTCTAGCTTAGGAGCTAAATCCTCTTCAATGGTTGGATCAATGACTTCTGGTGCTGGTGCACTCGGTTGCAGCAGAGGCCATCAGTGCTAG 1329 0.5102 MAASGKYVGVCLLVLVTLFLGAMARVQISELRNVEAQKLQSLTNSSMAARAKEAEALNNRAVADPEEIVSNVVMTIRNSTERRKLGFFSCGTGNPIDDCWRCDADWHRNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDTPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYNAPLNPFAKEVTKRVETAATEWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSGAGALGCSRGHQC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2413 442 Gene3D - 93 435 IPR012334 -
Glsi12g2413 442 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Glsi12g2413 442 PRINTS Pollen allergen Amb family signature 116 133 IPR018082 -
Glsi12g2413 442 PRINTS Pollen allergen Amb family signature 176 192 IPR018082 -
Glsi12g2413 442 PRINTS Pollen allergen Amb family signature 413 436 IPR018082 -
Glsi12g2413 442 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
Glsi12g2413 442 PRINTS Pollen allergen Amb family signature 240 261 IPR018082 -
Glsi12g2413 442 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Glsi12g2413 442 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Glsi12g2413 442 FunFam Pectate lyase 93 435 - -
Glsi12g2413 442 Pfam Pectate lyase 174 357 IPR002022 -
Glsi12g2413 442 SMART amb_all 168 365 IPR002022 -
Glsi12g2413 442 PANTHER PECTATE LYASE 18-RELATED 59 440 IPR045032 GO:0030570
Glsi12g2413 442 SUPERFAMILY Pectin lyase-like 75 436 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2413 Glsi-ChrGlsi12 38275150 38279543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2413 27 442 Polysaccharide Lyase AT4G13710 79.384 0.0 717