Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2411 ATGTTGTCAATGCCCAGTTCGAGGCAATCCTTCTTCTTCTTCTTTTCTGTTTCTTCACTAGTCAGATTTACCTATCTCTTCCTCACTATTAGTCTCCTATATAGCCCTGCATTCTCTTCTAACCATGAAGCTTATCTGCTCTTTTCCTGGCTCCATAATAACTCTGTCTCACCACCCTCTGCATTTTTTTCTAACTGGAACATTCTTGACAGAAACCCATGCAACTGGACCTCCATAACATGTTCTCATCAAGGTTTTGTCACAGAAATTAATGTAGTTTCTATCCCTATTGAAATTCCTCTGCCTTCTAATCTCTCTTCCTTACGTTTTCTGCGGAAACTTGTCATATCAGATGCCAATCTCACTGGGAACATCCCTTCTGACATTGGTTCTTGCTCTGCCCTCACTGTCATTGATCTTAGCTCCAATAATCTTATTGGTTCTATCCCTGCAAGCATTGGGAAGCTTCAAAATCTGGAGATTTTGACTTTAAACTCCAACCAGCTCAGTGGAAGAATCCCTCATGAACTAAGCAATTGCATTGGCCTGAAAACTCTCCTCCTTTTCAATAACCAGCTAGGTGGAGCTATCCCACCTCTGCTAGGACAATTGTCAAAACTTGAGGTTCTTAGAGCTGGAGGGAACAAAGACATTACTGGGAATATACCAGATGACCTTGGATATTGCAGCAATTTGACTGTCTTGGGGCTGGCTGAAACCAGCATATCAGGCTCTTTGCCAGCATCATTGGGTCGGCTTAGCAAGCTTCAGAGACTGTCCATTTATACTACGAAGCTTTCTGGTGAGATTCCACCTCATATAGGTAACTGCTCTGAGCTTGTTGATTTTGTTCTATACGGAAATAGTCTATCAGGTTCTATTCCATCTGAGTTCGGAAAGCTCAAGAAGCTGCAGAATTTGCTTTTATGGCAGAATGGTCTTCTTGGGGCTATTCCTGAAGAGATTGGCAATTGTACAAGCTTGAAAAGTCTAGATCTCTCTATGAATTCTCTATCTGGAGTTATCCCTTTGTCTATAGGTGGACTTTTGGAACTCGAAGAGTTTATGATTACTGACAACAATGTGTCTGGTTCCATACCTTCCAATCTCTCAAATGCCACAAATCTGCAACAGTTACAAGTAGACACTAACCAAATCTTAGACTTGATCCCACCAGAGCTTGGGATGTTGCAGAAGCTCACTGTGTTCTATGCTTGGCAGAACCAACTTAAAGGAACCATCCCTTCTACTTTAGCCAACTGCAGCAACCTCCAAGAACTAGACTTGTCTCGCAATACACTTACGGGTAGCATTCCAAAAGGCCTACTTCAGCTTCAAAACCTCACACAGCTTCTCTTGATTTTCAATGGCTTATCAGGAGCAATTCCACCAGAGTTAGGTAGTTGCAGCTCTCTCGTAAGGCTTCGGCTTGGAAACAATCAGATTTCTGGTGAGATTCCTAAGACAATTGGAAGTCTCAAGAGTTTAAACTTCTTTGATCTCGCTGGGAATCGATTATCTGGGTCAGTGCCGGATGAGATTGGCAGATGCTCAGAACTGGAAATGATAGACCTCAGCTACAATAGCTTAGAAGGTCCACTGCCTAGTTCATTGTCATCACTATCCACTCTGCAGGTTTTGGATGCATCTTCTAATAGATTTTCAGGTCGCATACCTGCAAGCTTAGGTCATCTTTCTTCCCTAAATAAACTAGTACTAAGCAGAAATGCATTCTCTGGACCAATTCCTCCCTCCCTTGGTCTATGTTCGAGCCTCCAAATGCTTGATCTTAGCAGCAATGAGCTCACTGGAAGCATCCCAGAAGAGATAGGACATATGGGAACTCTTGAAATTGCTCTTAACCTTAGTCACAATTCCCTTAGTGGATCAATCCCAGCTCAGATCTCTTCACTGAGCAAGCTTTCAGTATTGGACATTTCACACAACATGTTGGAGGGGGATTTGCATTTATTTACTGAGCTTGAAAATCTCGTCTCTCTGAACATTTCTTACAATAACTTCACTGGGTTTCTTCCTGACAATAAGCTTTTTAGACAGTTATCAGCAGAAGAACTAAAGGGAAACAATGGTCTGTGTTCTTGGATTCAGGATTCATGCTTCTTAAGTGATGCAGGCAGGGAAGAATCAACTAGAAATTTGAAGAAGTCACAACTGCTTAAACTAGTAATTGGATTGCTTGTAGTGTTGACAGTGATACTCATAGCTATAGCGATAATTGCGGTAGTAAGGGCAAGAAGAACCATTAGAGACAACGATTCAGAAACGGGTGAATCATGGACATGGCAGTTCACTCCGTTCCAGAAGCTAAACTTCTCAGTTGAGGAAGTACTTAAATGTTTAGTATATGAAAATATAATCGGAAAAGGATGCTCTGGTGTTGTGTATCGAGCTGATATGGGTGATGGTGAAGTCATAGCAGTGAAGAAACTGTGGCCAACTACAATGGCTGCTGGAGATGGACTTAAGGATGGTAAGAGTGGAGTTCATGACCCATTCTCGGTAGAGGTGAAAACCCTTGGCTCAGTCCGACATAAGAACATTGTAAGATTTTTGGGATGTTGTTGGAATCGAAAAACAAGGTTGCTTATGTATGATTATATTCCAAATGGGAGCCTGGCTAGTCTAATTCATGAGAGAACTGGAAATTCTTCTTTGGAATGGGATGTTAGGTACCAAATCTTGTTAGGTGCTGCACAAGGCCTTGAATATCTGCATCATGATTGCGTCCCTCCAATAGTCCACAGAGACATTAAAGCCAATAACATCCTCATTGGGCATGAATACGAAGCTTACATTGCTGACTTTGGCTTGGCTAAGCTTGTTGATGATGGTGATTTTGGCAGGTCCTCCAACACAGTTGCTGGTTCTTATGGGTACATTGCTCCAGAGTATGGCTATACGATGAAGATCACAGAGAAGAGTGACGTTTACAGTTTTGGTGTGGTTTTGCTGGAAGTCTTGACAGGTAAGCAACCAATTGATCCAACCATACCAGATGGGCTGCATGTTGCTGATTGGATAAGACAGAGAAGGGGACAAGTTGAAGTCCTAGACCCTAGCTTACAATCTAAACCAGAATCAGAAATAGAAGAAATGATGCAGGCATTAGGCATTGCCCTATTATGCTTAAATTCTACCCCAGATGGAAGACCAACAATGAGAGATGTGACCACAATGCTCAAGGAAATTAAGCATGAGAGAGAGGAATATGCAAAAGTTGATGTCCTTCTAAAAGGCTTTCCTGCAGCAACTGATTCTCATGGGAAGGAAAACCATAGCGGGGTTCCTACGGGATCTTCAAAAGCACCAGAAATTGCAAGCTTGTATAAGAAAAGCTATAACACAAGCTTCTCTGCATCCTCACTCCTATATTCATCCTCTTCTAGTGTCAAATATTTGAGCTTCAAGTAA 3432 0.4202 MLSMPSSRQSFFFFFSVSSLVRFTYLFLTISLLYSPAFSSNHEAYLLFSWLHNNSVSPPSAFFSNWNILDRNPCNWTSITCSHQGFVTEINVVSIPIEIPLPSNLSSLRFLRKLVISDANLTGNIPSDIGSCSALTVIDLSSNNLIGSIPASIGKLQNLEILTLNSNQLSGRIPHELSNCIGLKTLLLFNNQLGGAIPPLLGQLSKLEVLRAGGNKDITGNIPDDLGYCSNLTVLGLAETSISGSLPASLGRLSKLQRLSIYTTKLSGEIPPHIGNCSELVDFVLYGNSLSGSIPSEFGKLKKLQNLLLWQNGLLGAIPEEIGNCTSLKSLDLSMNSLSGVIPLSIGGLLELEEFMITDNNVSGSIPSNLSNATNLQQLQVDTNQILDLIPPELGMLQKLTVFYAWQNQLKGTIPSTLANCSNLQELDLSRNTLTGSIPKGLLQLQNLTQLLLIFNGLSGAIPPELGSCSSLVRLRLGNNQISGEIPKTIGSLKSLNFFDLAGNRLSGSVPDEIGRCSELEMIDLSYNSLEGPLPSSLSSLSTLQVLDASSNRFSGRIPASLGHLSSLNKLVLSRNAFSGPIPPSLGLCSSLQMLDLSSNELTGSIPEEIGHMGTLEIALNLSHNSLSGSIPAQISSLSKLSVLDISHNMLEGDLHLFTELENLVSLNISYNNFTGFLPDNKLFRQLSAEELKGNNGLCSWIQDSCFLSDAGREESTRNLKKSQLLKLVIGLLVVLTVILIAIAIIAVVRARRTIRDNDSETGESWTWQFTPFQKLNFSVEEVLKCLVYENIIGKGCSGVVYRADMGDGEVIAVKKLWPTTMAAGDGLKDGKSGVHDPFSVEVKTLGSVRHKNIVRFLGCCWNRKTRLLMYDYIPNGSLASLIHERTGNSSLEWDVRYQILLGAAQGLEYLHHDCVPPIVHRDIKANNILIGHEYEAYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYTMKITEKSDVYSFGVVLLEVLTGKQPIDPTIPDGLHVADWIRQRRGQVEVLDPSLQSKPESEIEEMMQALGIALLCLNSTPDGRPTMRDVTTMLKEIKHEREEYAKVDVLLKGFPAATDSHGKENHSGVPTGSSKAPEIASLYKKSYNTSFSASSLLYSSSSSVKYLSFK 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2411 1143 PRINTS Leucine-rich repeat signature 328 341 - -
Glsi12g2411 1143 PRINTS Leucine-rich repeat signature 638 651 - -
Glsi12g2411 1143 SUPERFAMILY L domain-like 390 705 - -
Glsi12g2411 1143 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 216 439 - -
Glsi12g2411 1143 Pfam Leucine rich repeat N-terminal domain 54 82 IPR013210 -
Glsi12g2411 1143 Gene3D Transferase(Phosphotransferase) domain 1 874 1085 - -
Glsi12g2411 1143 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 874 1085 - -
Glsi12g2411 1143 SUPERFAMILY L domain-like 61 409 - -
Glsi12g2411 1143 Gene3D Ribonuclease Inhibitor 191 264 IPR032675 -
Glsi12g2411 1143 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 535 618 - -
Glsi12g2411 1143 Gene3D Ribonuclease Inhibitor 40 190 IPR032675 -
Glsi12g2411 1143 SUPERFAMILY Protein kinase-like (PK-like) 762 1068 IPR011009 -
Glsi12g2411 1143 Gene3D Ribonuclease Inhibitor 265 369 IPR032675 -
Glsi12g2411 1143 FunFam Nuclear pore complex protein NUP107 40 199 - -
Glsi12g2411 1143 ProSitePatterns Serine/Threonine protein kinases active-site signature. 919 931 IPR008271 GO:0004672|GO:0006468
Glsi12g2411 1143 Pfam Protein kinase domain 790 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2411 1143 Pfam Leucine Rich Repeat 135 156 IPR001611 GO:0005515
Glsi12g2411 1143 PANTHER RECEPTOR-LIKE PROTEIN 55 447 1071 - -
Glsi12g2411 1143 Gene3D Ribonuclease Inhibitor 445 709 IPR032675 -
Glsi12g2411 1143 ProSitePatterns Protein kinases ATP-binding region signature. 793 816 IPR017441 GO:0005524
Glsi12g2411 1143 Gene3D Phosphorylase Kinase; domain 1 767 873 - -
Glsi12g2411 1143 SMART serkin_6 787 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2411 1143 Pfam Leucine rich repeat 399 458 IPR001611 GO:0005515
Glsi12g2411 1143 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 770 873 - -
Glsi12g2411 1143 ProSiteProfiles Protein kinase domain profile. 787 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2411 1143 SMART LRR_typ_2 421 445 IPR003591 -
Glsi12g2411 1143 SMART LRR_typ_2 493 517 IPR003591 -
Glsi12g2411 1143 SMART LRR_typ_2 590 613 IPR003591 -
Glsi12g2411 1143 SMART LRR_typ_2 565 589 IPR003591 -
Glsi12g2411 1143 SMART LRR_typ_2 661 686 IPR003591 -
Glsi12g2411 1143 SMART LRR_typ_2 301 325 IPR003591 -
Glsi12g2411 1143 SMART LRR_typ_2 156 180 IPR003591 -
Glsi12g2411 1143 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 440 534 - -
Glsi12g2411 1143 Gene3D Ribonuclease Inhibitor 372 444 IPR032675 -
Glsi12g2411 1143 FunFam Putative LRR receptor-like serine/threonine-protein kinase 619 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2411 Glsi-ChrGlsi12 38257734 38261567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2411 36 1086 Receptor kinase-like Gene Family AT5G56040 46.241 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi12g2411 Pkinase 9.1e-41 CL0016