Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2407 ATGATCACTGTGACGAGTTTCTGTTGCCATTTAATTTCCGTACAGAAGAGAAAAAGGAGACAGCAGTTGCTGATCAGAATTAGAGCCTCTTCAATTGCTCTGCATTCTGCTTCGAAAGCTGAGTGGGCTGAGCTCTGTTTGACATTGCCCGGGAGTAGAGTACCTCTTTCAACCCTAACAACTGCAGTAAGGTTTTCTTGTTCTGAATTCAGACGAAAGAATGCCCATCAGGAAACCCATTATGATGTTCTTAATGTGAAGGAAGATGCAAGCTATGAAGAAATTCGTACTAGTTACCGCAGTGCTATACTCAGTTTACATCCTGATAAATTATTGAAGACATCTGAGACATCCAGCAACGATCAATTGTCGGGAGACAGATTCCTCAGAGTACAAAAGGCATGGGAAATTCTCAGCAATTCAAGCTCTCGTTTGATTTACGATAATGAGCTGCGTGGTTCAAGGCAGGATGTGTTTGCTGCTGAGGTTTCAGAAGATGTAAACTTACAGGATATGATCGCTGAAGACGATGGAGAAGCATTGGAGCTCTTTCACCAGTGCAGGTGTGGGGATTACTTCTCCATAGACTCTGCGGAATTGGGGAAAATGGGGTATTCATTGTTGAGGAATGGAAGTGGGATTTCTTTACTTACAGTTGATGCTTTACCAGGATCAGTGATTCTTCCCTGTGGATCTTGCTCCCTAAAAGCTCGTCTACTAATCAATATGGATGACATTAATTGA 744 0.4247 MITVTSFCCHLISVQKRKRRQQLLIRIRASSIALHSASKAEWAELCLTLPGSRVPLSTLTTAVRFSCSEFRRKNAHQETHYDVLNVKEDASYEEIRTSYRSAILSLHPDKLLKTSETSSNDQLSGDRFLRVQKAWEILSNSSSRLIYDNELRGSRQDVFAAEVSEDVNLQDMIAEDDGEALELFHQCRCGDYFSIDSAELGKMGYSLLRNGSGISLLTVDALPGSVILPCGSCSLKARLLINMDDIN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2407 247 PRINTS DnaJ domain signature 99 114 IPR001623 -
Glsi12g2407 247 PRINTS DnaJ domain signature 123 143 IPR001623 -
Glsi12g2407 247 PRINTS DnaJ domain signature 81 99 IPR001623 -
Glsi12g2407 247 Gene3D DnaJ domain 65 155 IPR036869 -
Glsi12g2407 247 ProSiteProfiles dnaJ domain profile. 79 151 IPR001623 -
Glsi12g2407 247 SUPERFAMILY CSL zinc finger 164 245 IPR036671 -
Glsi12g2407 247 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 163 242 IPR007872 -
Glsi12g2407 247 PANTHER DPH3 HOMOLOG-RELATED 79 244 IPR044248 GO:0017183|GO:0046872
Glsi12g2407 247 Pfam DnaJ domain 79 148 IPR001623 -
Glsi12g2407 247 SUPERFAMILY Chaperone J-domain 24 147 IPR036869 -
Glsi12g2407 247 FunFam DNAJ heat shock N-terminal domain-containing protein-like 157 245 - -
Glsi12g2407 247 CDD DnaJ 79 140 IPR001623 -
Glsi12g2407 247 Pfam CSL zinc finger 166 240 IPR007872 -
Glsi12g2407 247 Gene3D DPH Zinc finger 156 247 IPR036671 -
Glsi12g2407 247 SMART dnaj_3 78 143 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2407 Glsi-ChrGlsi12 38239432 38246448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2407 80 148 C2H2 Transcription Factor Family AT1G74250 39.130 1.68e-08 52.8