Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2398 ATGTCAGGGTCAGGGAATTTCAATAAAAGGAGAACGTTGGCAGACAGGTGTTCTGGTATTTTACTATTATTGGCTTTTCTTCTTTATAGTACTGAGGGGTTAAACAGTGAGGGGTTCTACCTCATAGAACTGAAGAATAGTCTCCATGATGAATCTAATCGTTTGGCGAATTGGAAATCCACTGATGAAACTCCATGTGGATGGACAGGTGTAAATTGCACTTCTGGCAATAATCCAGTGGTCTGGTACCTTAATTTGAGTTCAATGAATCTTTCTGGAACTCTAAATCCAACCATTGGGGGCTTGGAACACCTAACTTATCTCAATATTGCTTACAATGGGCTGATGGGAAATATACCCAAGGATGTTGGAAATTGCTCGAGATTACAATATCTTTATTTGAACAATAATCTATTGGAGGGACAAGTTCCTGCCGAATTGGGTAAGCTGTCCCTTTTGAAAAGTTTGAATATATGCAACAACAAAATCTCTGGTACTCTTCCAGATGAGTTGGGAAACTTATCTTCATTGGTTGAGCTTGTGGCCTACACAAACAATCTCACTGGCCCCCTGCCTCGTTCTATTGGAAATCTTAAGAATCTCATAACTCTGAGAGCTGGGGGAAATGGAATTTCTGGTAGCCTGCCAGGTGAAATTGGTGGGTGTAAGAGCTTGGAATATCTTGGTCTTGCCCAAAATCAGATAGGAGGGGAACTACCAAGAGAGATTGGGGTGCTTCAGAACTTAACAGAACTGATTCTATGGAATAACCTGTTATCAGGACTTATTCCTAAAGAGCTTGGGAATTGTAAGAGCCTTGATACCCTTGCTTTGTATGGAAATGCTCTTGTTGGACCTATACCTGAGGAGATTGGGAATCTTAAATCACTGAAGAAGTTGTACCTTTACAGAAATAAGTTGAATGGAACCATTCCGAGGACAATTGGGAATCTTTCTTTGGCGTTTGAAATTGATTTCTCAGAAAACTCTTTAGTGGGTGAAATTCCCTCTGAGTTCAGTAAAATAAGTGGTCTACGCTTGCTCTTTCTCTTTGAGAATCACCTAACTGGTGTTATACCGGACGAGTTTAGTAGTTTGGGGAACTTGACAAGGCTCGACCTGTCAATTAATAATCTAACAGGTTCAATTCCATTTGGGTTCCAGTATTTGAATCGTATGTCTCAGTTGCAACTTTTTGACAACTCTCTAAGTGGAAATATTCCTCAAAGCCTTGGACTTTATAGTCCGTTTTGGGTGGTTGATTTTTCCGACAATCACTTGACAGGGGAAATCCCTCCTCATCTATGTCGAAATTCTAGGTTGATGTTGTTGAATCTGGCATCTAATAAGCTGTATGGAAATATACCGACTGGGATCTTGAATTGTGAAACATTGGCACAACTGCTATTGGTTGGAAATAGTCTTACTGGTGCCTTTCCTTCAGAGTTATGTAAACTAGTGAACCTTACTGCAATTGAGTTGAACCAGAACAGGTTCAATGGTCCTATTCCTCCTGAGATTGGAAGCTGCCAGAAGTTGCAGAGGCTTCATATTGCAAACAATTACTTCACATTAGAGTTGCCTACGGAAATAGGAAATCTTTCCCAATTAGTGACCTTTAATGTTTCATCCAATTCTTTTACTGGACCAATCCCGCGTGAAATTGTTAGATGCAAAATGCTTCAGCGACTTGATCTCAGTCAGAATAGCTTTACTGGTTCCTTGCCAGATGAGCTTGGAACACTCTCACAGTTGGAGCTTCTCAGGCTTTCCGATAATAAGGTCACTGGACATATTCCTGCAGCATTAGGTAATCTGCTTCATTTGACTGCGTTGCAGATGGGCGGCAATTTACTTTCTGGCGAAATACCTCCTGATCTGGGTAATCTCTCAAGCTTACAGATTGCATTGAATCTCAGTTACAATAATCTTACTGGAAGTATACCTGAGAAGCTTGGCAATCTCAATTTGCTTGAATTCCTCCTTCTCAATAACAATCATCTGAGTGGTGAAATTCCTAGCACATTAGAAAATCTTTCAAGTTTGCTTGGGTGTAATTTCTCATACAATAATATCTCTGGACCTATACCTTCCATTCCACTATTTGAAAATATGGCAATTAGTAGCTTTATTGGTAACAAAGGCCTCTGTGGTGCTCCACTGGTTGACTGCAACGCTAATCCATCTTCTCGTTCCGTTCCTCCTCTGAAAAGTGACAATACTCCTCGTAGCAAAATTATCACATCAGTTGCAGCTTCTATTGGTGGTGTTTCTCTCATTTTAATAATAATAATTTTATATGTTATGAGACGTCCTCCTGAGTCAGTTTCTTCATTGCGGGATTCTGAGATTCCCTCCCCAGATTCAGATATCTATTTTCCTCCAAAAGATGGTTTCACCTTCCAAGATCTACTTGAAGCTACGAGTAATTTTCATGACAGTTTTGTTATTGGAAGGGGGGCGTGTGGAACAGTTTATAAGGCAGTGATGCTATCTGGCAAGACCATTGCTGTCAAAAAGTTAGCATCCAACAGGGAGGGGAACAACATTGAGAATAGTTTCCGGGCTGAGATATTAACTCTTGGAAAGGTAAGGCATCGAAATATAGTGAAGCTGTATGGGTTTTGTTATCACCAAGGCTCCAATCTCCTGCTATACGAGTACATGGCAAGGGGTAGCTTAGGTGAACAACTTCATGGTTTTGCGACTAATTTGGAATGGCCAACTCGGTTCATGATTGCTCTTGGAGCTGCTGAGGGTCTTGCCTACTTGCATCATGACTGCAAACCGAAGATTATTCATCGTGACATAAAATCAAATAACATTCTACTTGATGAAAATTTTGAGGCTCATGTAGGGGATTTTGGTTTGGCAAAAGTGATTGACATGCCTCAATCAAAATCAATGTCAGCAGTTGCTGGATCCTATGGATATATTGCTCCTGAATATGCATATACTATGAAGGTCACTGAGAAGTGTGACATTTATAGCTATGGGGTTGTTCTGTTGGAGTTGCTAACAGGAAGAACTCCTGTTCAGCCACTAGATCAAGGAGGCGATCTCGTGACATGGGTGAGGAATCATATTCGCAGCCATGGCAATTCATTGACTTCTGGGATACTTGACAATCGCCTCAATCTCGATGACCAAACCACCGTGAATCACATGCTCACTGTTCTGAAAATTGCTTTACTCTGCACAAAAATGACCCCTCCTAATCGGCCATCGATGCGCCAAGTTGTGTTGATGCTTATTGAGTCCAACGAGCGAGAAGGAAACTTGACCCTTTCTTCAACTTATGCTTCTCTTGCTTCCAAAGATGCAACGTGA 3330 0.4102 MSGSGNFNKRRTLADRCSGILLLLAFLLYSTEGLNSEGFYLIELKNSLHDESNRLANWKSTDETPCGWTGVNCTSGNNPVVWYLNLSSMNLSGTLNPTIGGLEHLTYLNIAYNGLMGNIPKDVGNCSRLQYLYLNNNLLEGQVPAELGKLSLLKSLNICNNKISGTLPDELGNLSSLVELVAYTNNLTGPLPRSIGNLKNLITLRAGGNGISGSLPGEIGGCKSLEYLGLAQNQIGGELPREIGVLQNLTELILWNNLLSGLIPKELGNCKSLDTLALYGNALVGPIPEEIGNLKSLKKLYLYRNKLNGTIPRTIGNLSLAFEIDFSENSLVGEIPSEFSKISGLRLLFLFENHLTGVIPDEFSSLGNLTRLDLSINNLTGSIPFGFQYLNRMSQLQLFDNSLSGNIPQSLGLYSPFWVVDFSDNHLTGEIPPHLCRNSRLMLLNLASNKLYGNIPTGILNCETLAQLLLVGNSLTGAFPSELCKLVNLTAIELNQNRFNGPIPPEIGSCQKLQRLHIANNYFTLELPTEIGNLSQLVTFNVSSNSFTGPIPREIVRCKMLQRLDLSQNSFTGSLPDELGTLSQLELLRLSDNKVTGHIPAALGNLLHLTALQMGGNLLSGEIPPDLGNLSSLQIALNLSYNNLTGSIPEKLGNLNLLEFLLLNNNHLSGEIPSTLENLSSLLGCNFSYNNISGPIPSIPLFENMAISSFIGNKGLCGAPLVDCNANPSSRSVPPLKSDNTPRSKIITSVAASIGGVSLILIIIILYVMRRPPESVSSLRDSEIPSPDSDIYFPPKDGFTFQDLLEATSNFHDSFVIGRGACGTVYKAVMLSGKTIAVKKLASNREGNNIENSFRAEILTLGKVRHRNIVKLYGFCYHQGSNLLLYEYMARGSLGEQLHGFATNLEWPTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPLDQGGDLVTWVRNHIRSHGNSLTSGILDNRLNLDDQTTVNHMLTVLKIALLCTKMTPPNRPSMRQVVLMLIESNEREGNLTLSSTYASLASKDAT 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2398 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Glsi12g2398 1109 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 889 1101 - -
Glsi12g2398 1109 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 33 191 - -
Glsi12g2398 1109 SUPERFAMILY L domain-like 461 724 - -
Glsi12g2398 1109 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Glsi12g2398 1109 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 288 390 - -
Glsi12g2398 1109 Gene3D Ribonuclease Inhibitor 34 193 IPR032675 -
Glsi12g2398 1109 SMART LRR_typ_2 150 174 IPR003591 -
Glsi12g2398 1109 SMART LRR_typ_2 534 558 IPR003591 -
Glsi12g2398 1109 SMART LRR_typ_2 246 269 IPR003591 -
Glsi12g2398 1109 SMART LRR_typ_2 582 605 IPR003591 -
Glsi12g2398 1109 SMART LRR_typ_2 606 630 IPR003591 -
Glsi12g2398 1109 SMART LRR_typ_2 198 222 IPR003591 -
Glsi12g2398 1109 SMART LRR_typ_2 342 365 IPR003591 -
Glsi12g2398 1109 SMART LRR_typ_2 102 126 IPR003591 -
Glsi12g2398 1109 SMART LRR_typ_2 486 510 IPR003591 -
Glsi12g2398 1109 SMART LRR_typ_2 294 318 IPR003591 -
Glsi12g2398 1109 SMART LRR_typ_2 366 389 IPR003591 -
Glsi12g2398 1109 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 192 287 - -
Glsi12g2398 1109 Gene3D Phosphorylase Kinase; domain 1 782 888 - -
Glsi12g2398 1109 FunFam Leucine-rich repeat receptor protein kinase MSP1 774 888 - -
Glsi12g2398 1109 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 485 1085 - -
Glsi12g2398 1109 SUPERFAMILY L domain-like 49 411 - -
Glsi12g2398 1109 Gene3D Ribonuclease Inhibitor 194 322 IPR032675 -
Glsi12g2398 1109 Gene3D Transferase(Phosphotransferase) domain 1 889 1101 - -
Glsi12g2398 1109 Gene3D Ribonuclease Inhibitor 389 728 IPR032675 -
Glsi12g2398 1109 Pfam Leucine rich repeat 344 403 IPR001611 GO:0005515
Glsi12g2398 1109 Pfam Leucine rich repeat 248 307 IPR001611 GO:0005515
Glsi12g2398 1109 ProSiteProfiles Protein kinase domain profile. 811 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2398 1109 Gene3D Ribonuclease Inhibitor 323 388 IPR032675 -
Glsi12g2398 1109 SUPERFAMILY Protein kinase-like (PK-like) 786 1084 IPR011009 -
Glsi12g2398 1109 Pfam Protein kinase domain 813 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2398 1109 SMART serkin_6 811 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2398 1109 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 414 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2398 Glsi-ChrGlsi12 38198616 38202637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2398 56 1084 Receptor kinase-like Gene Family AT1G73080 38.497 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi12g2398 Pkinase 9.9e-48 CL0016