Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2397 ATGGTAACTTTACTCGTTCAACGCTTGTGTCATGCATTGACTGACCCGCGACTCCTCCCTTCTGGGTTCTGTTCTTGCTTTGTCTTGCGAATCCCTGCTGGAACCTGTGTGACCTTAGCCAGTATTCTAGGAGGGATGGAGTCCCTTGGTTTTGTTGATGACCTCTTGGATTTCTCATCAGACCTAGGTGAGGAAGATGATGAGGAAGAAAAATCCAGGAAAGCCCTTCCTTCAATTAACCCTAAATGCAGTGATCCAGCATCATTCAATGCTTTGGACCATGATGGTCCTACTAGCCATTCATTTTCTGACTTTGCAGAAGAAGAGCTTGAGTGGCTATCCAACAAAGATGCATTTCCTGCCATTGAAACATTTGACGACATACTCTCTGTTCAACCCAGCATATCAAAGCACCAAAACACAGTCTCAGTTCTTGAATACAGCACAAGCAGTACCAACAGTAACAACAGCACTAACAGCAGTACCCTCTTAAGCTTCAATCATCACATTAAGGTCCCTGTCCGTGCACGGAGCAAGCGTCGCAGTAGGTGTCACCATGGCCTTGTTGACTCCTCCAGCCACCAATTTTGGTGGAGCCAACTGAGTAAAAAGGATCCCAAAGCAGAAGCGGTGATAACAATCTCAACGATTGGGAGGAAATGCCAGCACTGTGGAGCAGAAAAAACTCCACAATGGCGGGCAGGTCCCCTTGGGCCAAAAACACTGTGTAATGCATGTGGGGTTAGGTACAAGTCAGGGCGGCTTGTGCCTGAGTACCGGCCTGCAAGTAGCCCATCATTTTCCAGTGAGTTGCATTCAAATTCCCACAGGAAGATAATGGAGATGAGGAGCCTGAAGCAAATGGAAATGGTTGTGAATGCCATGGATAAAGGCTAA 897 0.4705 MVTLLVQRLCHALTDPRLLPSGFCSCFVLRIPAGTCVTLASILGGMESLGFVDDLLDFSSDLGEEDDEEEKSRKALPSINPKCSDPASFNALDHDGPTSHSFSDFAEEELEWLSNKDAFPAIETFDDILSVQPSISKHQNTVSVLEYSTSSTNSNNSTNSSTLLSFNHHIKVPVRARSKRRSRCHHGLVDSSSHQFWWSQLSKKDPKAEAVITISTIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRLVPEYRPASSPSFSSELHSNSHRKIMEMRSLKQMEMVVNAMDKG 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2397 298 Gene3D - 216 289 IPR013088 GO:0006355|GO:0008270
Glsi12g2397 298 CDD ZnF_GATA 220 268 IPR000679 GO:0006355|GO:0043565
Glsi12g2397 298 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 278 - -
Glsi12g2397 298 PANTHER GATA TRANSCRIPTION FACTOR 46 288 - -
Glsi12g2397 298 ProSiteProfiles GATA-type zinc finger domain profile. 215 251 IPR000679 GO:0006355|GO:0043565
Glsi12g2397 298 FunFam GATA transcription factor 212 297 - -
Glsi12g2397 298 ProSitePatterns GATA-type zinc finger domain. 221 246 IPR000679 GO:0006355|GO:0043565
Glsi12g2397 298 MobiDBLite consensus disorder prediction 62 81 - -
Glsi12g2397 298 Pfam GATA zinc finger 221 254 IPR000679 GO:0006355|GO:0043565
Glsi12g2397 298 SMART GATA_3 215 265 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2397 Glsi-ChrGlsi12 38180083 38184184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2397 46 287 C2C2-Gata Transcription Factor Family AT3G24050 42.491 2.35e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi12g2397 GATA 1.2e-16 CL0167