LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g2359	ATGGCTGGGCATATGGGTTGGGGTATGATTGAAGAAGAGGGTTGGAGGAAGGGTCCTTGGACTGCTGAGGAAGACAGATTGCTCATTGAGTATGTCAGAATCCATGGTGAAGGCAGATGGAACTCGGTTTCTAGGCTTGCAGGATTGAAAAGAAATGGGAAGAGCTGCAGATTGAGGTGGGTGAATTATCTGAGACCAGACCTCAAGAAGGGTCAGATAACACCACAGGAAGAGAGTATCATTCTAGAGCTGCATGCTAGGTGGGGGAACAGATGGTCAACAATTGCAAGAAGCTTACCAGGAAGGACTGACAATGAAATAAAGAACTATTGGAGGACCCATTTCAAGAAAAAGGCAAAGAGTCCCCTTGATGCTGCAGAAAAGGCGAAAAATCGCCTCTTGAGGAGGCAGCAATTTCAACAGCAGCAGCAACAACAGCAGCTGCAGCAGCAGCAGCAGCAACATTACCAACAACAACAACAACTGCAATTCAGCTTGGACATCAAAGGGATTATGGCCTTGCTCGAGGACAATGACCATAGAGTGGTGCCTTCTTTATCTCAAGTGAGGCAAGAAATGGCCAATATGTACCCAAACACCACAGAAGAGCAGGGCTGCTTTTACTCTATGCTTAATGGAAATGCCTCTGCATCAGAATCCTCAAATGAGGAAAATTTCTGGGATGGGCTGTGGAACTTGGATGATTTTCATGGCAATTTCAGTGCAGCTAGTGCAACAAACAAAGCCACTCTGCACAATTTAGTTGCTCCTTTCTGCTAA	780	0.459	MAGHMGWGMIEEEGWRKGPWTAEEDRLLIEYVRIHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPLDAAEKAKNRLLRRQQFQQQQQQQQLQQQQQQHYQQQQQLQFSLDIKGIMALLEDNDHRVVPSLSQVRQEMANMYPNTTEEQGCFYSMLNGNASASESSNEENFWDGLWNLDDFHGNFSAASATNKATLHNLVAPFC	259

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g2359	259	CDD	SANT	74	115	IPR001005	-
	Glsi12g2359	259	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	11	232	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Glsi12g2359	259	FunFam	MYB transcription factor	74	154	-	-
	Glsi12g2359	259	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	16	64	IPR017930	-
	Glsi12g2359	259	ProSiteProfiles	Myb-like domain profile.	65	115	IPR001005	-
	Glsi12g2359	259	FunFam	Myb transcription factor	17	69	-	-
	Glsi12g2359	259	CDD	SANT	19	64	IPR001005	-
	Glsi12g2359	259	Pfam	Myb-like DNA-binding domain	70	114	IPR001005	-
	Glsi12g2359	259	Pfam	Myb-like DNA-binding domain	17	64	IPR001005	-
	Glsi12g2359	259	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	65	119	IPR017930	-
	Glsi12g2359	259	Gene3D	-	74	118	-	-
	Glsi12g2359	259	SUPERFAMILY	Homeodomain-like	14	111	IPR009057	-
	Glsi12g2359	259	Gene3D	-	17	69	-	-
	Glsi12g2359	259	ProSiteProfiles	Myb-like domain profile.	12	64	IPR001005	-
	Glsi12g2359	259	Coils	Coil	123	161	-	-
	Glsi12g2359	259	SMART	sant	16	66	IPR001005	-
	Glsi12g2359	259	SMART	sant	69	117	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g2359	Glsi-ChrGlsi12	37867747	37869177	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g2359	12	259	MYB Transcription Factor Family	AT3G24310	58.015	5.99e-92	270

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi12g2359		Myb_DNA-binding	3.1e-16	CL0123