Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2358 ATGGATTCTCTTGCACCATTTCAAGACCTTAATCACGTCCCTGACCTACGCACCAGTGTACCCAGTAGCAGCACCGGCGCCGCTGAAACCACCACCTCCTCCAACCCCGTCAATGCGGTCACCACTACCCCCACCATTTTGTTGATCCCAAAGTTGGAACCCAAGCTTGAGCCGTTCGACGAGCTGTTTGCGACCCATCATACCCAAGAACCCCAAGAAATCCAGCCGGCCCTGTTTTCTAGTCCCACCCTTGGTGGGTTATCTGGTTCTCTTCTCACTCATTTCTCTGAGCCGAGCCTTGCTTTTGCTGAAACCCCAGGCTTATCGACGGAACAGGACAATGCGTACGAGGAATTTTGTCGAATTTCTGAGCAGTTTGGGACCGCGTTCTCTAAAACTTCAGAGCGATTTGGAGATGCCGAAGTTTTCGACCCAGATTCGCGGGCAATTGTTCCTGTGCCACAGGATAACCAGCCCCCGTCGCTCGTCGTTACTCCGAGGCGGAACCAGCGCCGGAAGGACCTTGTAAGGGTCACTGATCTTCGAATTGAGGACGAAAGGTATTTCCGCGACATTGTGAGGAGGACCAGGATGATCTATGATTCGTTGCGCGTTTTGTCAACGGTGGACGAGGAGAAAAGATTCGATTTGCCTAACAGTAAACGCCCGCGAGGTGATTTGAGGGCTTCCTCGTTGATGAGGGCTCATGGGTTGTGGCTTAATCGTGACAAGCGGATAGTCGGTGCGATTCCAGGGGTTTACATTGGCGATTTGTTCTTTTTTAGGATGGAATTGGTCGTGGTTGGGTTGCACGGTCAGCCACAAGCTGGAATTGACTATCTTCCTGCTAGCCAGAGCTCAAATGGGGAGCCGATAGCAACCAGTGTCATAGTTTCTGGTGGGTATGAGGATGATGAAGATGCTGGCGATGTGATAATCTACACGGGTCACGGAGGGCAAGATAAGAACTCAAGGGCAAGGCAAGTTGTTCACCAGAAGTTAGAAGGAGGAAATCTTGCAATGGAAAGAAGCATGCATTATGGGATTGAAGTGCGGGTTATTCGCGGGATCAAATATGAGGGAAGTGTTTCTAGTAAAGTTTATGTTTATGATGGCTTGTATAGAATTCTTCAATGCTGGTTTGATGTGGGTAAATCTGGTTTTGGAGTTTACAAGTATAAGCTTTTGAGAATTGAAGGCCAACCCGAAATGGGTAGTGCGATTCTTAGATTTGCTCAGACTCTTAGGGCTAACCCATTGGCTGTCAAGTCCATGGCTTATTTTAGTCTCGATATTTCTAACAAGAAGGAAAATGTTCCTGTTCGTCTTCTCAATGACATAGACAGGGATCATGACCCTCTTCGTTATGAGTATCTTCCAAGGACTAATTTTCCTCAATTTGTATTTCATCAAAGTGGGAATGCGACTGGTTGTGATTGTGTTGAAGGTTGTGCTGATAACTGCTTTTGTGCTATGAAAAACGGAGGTGAATTTCCTTATAATCTAAATGGGATTCTCTTGAGAGGGAAGCCTATAATTTTTGAATGTGGCCCTTTCTGCCGTTGCCCGCCACATTGCCGAAATCGTGTTGCACAAAAGGGGTTAAAATATAGATTAGAAGTGTTTAGGTCTAGGGAAACAGGTTGGGGAGTTAGATCACTGGACCTTATTCATGCTGGTGCTTTTATCTGTGAATATTCAGGGGTTGTTCTGACTATGGAGCAAGCACAAATTTTGACAATGAATGGTGATACATTGATATATCCAAGTCGGTTTACTAATAGGTGGGCAGAATGGGGGGATATATCTCAGATATACTCTGATTATGTACGCCCATCTTATCCATCAATTCCTCCTTTAGATTTTGCGATGGATGTGTCAACAATGAGGAATGTTGCTTGCTATATAGCCCACAGTTCAATTCCAAATGTGTTGGTTCAATTTGTTCTGTATGATCACAATAATTTAATTTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGGGAGCTCAGCCTTGATTATGGGGTGGCTGATGACTGGACAGGCAAGCTTTCTATATGTAACTGA 2082 0.4563 MDSLAPFQDLNHVPDLRTSVPSSSTGAAETTTSSNPVNAVTTTPTILLIPKLEPKLEPFDELFATHHTQEPQEIQPALFSSPTLGGLSGSLLTHFSEPSLAFAETPGLSTEQDNAYEEFCRISEQFGTAFSKTSERFGDAEVFDPDSRAIVPVPQDNQPPSLVVTPRRNQRRKDLVRVTDLRIEDERYFRDIVRRTRMIYDSLRVLSTVDEEKRFDLPNSKRPRGDLRASSLMRAHGLWLNRDKRIVGAIPGVYIGDLFFFRMELVVVGLHGQPQAGIDYLPASQSSNGEPIATSVIVSGGYEDDEDAGDVIIYTGHGGQDKNSRARQVVHQKLEGGNLAMERSMHYGIEVRVIRGIKYEGSVSSKVYVYDGLYRILQCWFDVGKSGFGVYKYKLLRIEGQPEMGSAILRFAQTLRANPLAVKSMAYFSLDISNKKENVPVRLLNDIDRDHDPLRYEYLPRTNFPQFVFHQSGNATGCDCVEGCADNCFCAMKNGGEFPYNLNGILLRGKPIIFECGPFCRCPPHCRNRVAQKGLKYRLEVFRSRETGWGVRSLDLIHAGAFICEYSGVVLTMEQAQILTMNGDTLIYPSRFTNRWAEWGDISQIYSDYVRPSYPSIPPLDFAMDVSTMRNVACYIAHSSIPNVLVQFVLYDHNNLIFPHLMLFAMENIPPMRELSLDYGVADDWTGKLSICN 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2358 693 Gene3D - 245 405 IPR036987 -
Glsi12g2358 693 ProSiteProfiles SET domain profile. 537 680 IPR001214 GO:0005515
Glsi12g2358 693 SUPERFAMILY PUA domain-like 229 411 IPR015947 -
Glsi12g2358 693 ProSiteProfiles PUA domain profile. 340 358 - -
Glsi12g2358 693 Pfam Pre-SET motif 432 529 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi12g2358 693 SMART G9a_1 243 401 IPR003105 -
Glsi12g2358 693 MobiDBLite consensus disorder prediction 1 39 - -
Glsi12g2358 693 ProSiteProfiles YDG domain profile. 248 397 IPR003105 -
Glsi12g2358 693 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 159 681 - -
Glsi12g2358 693 SUPERFAMILY SET domain 419 692 IPR046341 -
Glsi12g2358 693 ProSiteProfiles Pre-SET domain profile. 476 534 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi12g2358 693 MobiDBLite consensus disorder prediction 15 39 - -
Glsi12g2358 693 Pfam SET domain 548 680 IPR001214 GO:0005515
Glsi12g2358 693 Gene3D SET domain 406 693 IPR046341 -
Glsi12g2358 693 SMART set_7 537 686 IPR001214 GO:0005515
Glsi12g2358 693 SMART preset_2 429 521 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi12g2358 693 Pfam SAD/SRA domain 247 401 IPR003105 -
Glsi12g2358 693 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 230 414 - -
Glsi12g2358 693 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 83 693 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2358 Glsi-ChrGlsi12 37850428 37852509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2358 167 682 Su(var)3-9 homologs AT5G04940 38.795 3.87e-107 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi12g2358 SAD_SRA 7e-48 CL0178