Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2342 ATGGGCCCCATATCATCACTAATTCCACCACCTCCAACAGAACCCTTTCCCCCTTCCTTCGTGCTTCTTTTCTTTCTCGTCCCTCAATACCATATTGTCCTCCACTCTTCCTCCCGTTGCCAAGTGACCTGCAATTTCATCCCCTTTTTACCACCCTCTTCCTCATTCCCTCCTTCCCTCACAATCCCACCTTTCCCTTTACTCCTTCCTCTTGCTTCAATCTTCAATCCTTTCTCTATGACTCTGGGTTTGCTAGGCGGTGGTGGTGGTTCTTCTGGGGCTTCCTCAAATGAGCCCGCAGTTACAAATGCAAAGCTTCTGGGGCAGGAATGCTTGACCATGTCTCCCTCCGGGGCATCCTCATACCGGGGCGAGGCCGAACTTGAATTGGGTTTGGGTCTCAGCCTTGGAGGTGTTGGGAAGGCCAGGCCTTCTTCTGCATGGGGTGAGTGTGGTCGTATTTTGACAGCCAAAGACTTCCCTTCTGGAGTCTCTCATGGACCTTCGGTTGCTGCTTCTCGTTTCTCAGATAGAGTCAGTACTGTGACTGGTTCTGTTTCTGGGACTAAACGAGCTGCTGACTCTGTCTCTCAGGATGGTGGATCTCCTACTGCTGGCAGCAGTCAAGTGGTTGGATGGCCACCCATCAGGGCACATAGGATGAACAGCTTGATTAACCAAGCAAAATGTCAGCGGGCTGAAGAAGACAAATTCAGTGGAGAGAAAAATAATCCCAATGATGCTTCTGTTACCAAACCCAGCGCCACCGTGACTGAAAAAAACCACCTTGGATTTGTGAAGGTGAATATGGATGGAATCCGTATAGGGAGAAAGGTAGACTTGAATTCTCATTCAAGCTATGAGGCTTTAGCTCAAACACTGGAAGACATGTTTTTCAGGCCTCCTACAGCTACTGATCCAACTGTAGGCGGTGCAAAAGAACAGGCAACAAAACCCTCTAAGCTTTTAGATGAAACATCTGAATTTGTGCTCACGTATGAAGATAAAGAGGGTGATTGGATGCTTGTGGGTGATGTTCCCTGGCGGATGTTTCTGAGCTCAGTGAGAAGGCTCCGAATCATGAGAACATCTGAGGCTAATGGGCTTGGTCCAAGATATCAAGAGAAAAAAGCGAGACTAAGAAGTAAACCCATTTAA 1158 0.4819 MGPISSLIPPPPTEPFPPSFVLLFFLVPQYHIVLHSSSRCQVTCNFIPFLPPSSSFPPSLTIPPFPLLLPLASIFNPFSMTLGLLGGGGGSSGASSNEPAVTNAKLLGQECLTMSPSGASSYRGEAELELGLGLSLGGVGKARPSSAWGECGRILTAKDFPSGVSHGPSVAASRFSDRVSTVTGSVSGTKRAADSVSQDGGSPTAGSSQVVGWPPIRAHRMNSLINQAKCQRAEEDKFSGEKNNPNDASVTKPSATVTEKNHLGFVKVNMDGIRIGRKVDLNSHSSYEALAQTLEDMFFRPPTATDPTVGGAKEQATKPSKLLDETSEFVLTYEDKEGDWMLVGDVPWRMFLSSVRRLRIMRTSEANGLGPRYQEKKARLRSKPI 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2342 385 MobiDBLite consensus disorder prediction 184 209 - -
Glsi12g2342 385 Gene3D - 258 374 - -
Glsi12g2342 385 MobiDBLite consensus disorder prediction 231 253 - -
Glsi12g2342 385 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 127 368 IPR003311 GO:0005634|GO:0006355
Glsi12g2342 385 ProSiteProfiles PB1 domain profile. 263 365 IPR000270 GO:0005515
Glsi12g2342 385 MobiDBLite consensus disorder prediction 184 211 - -
Glsi12g2342 385 FunFam Auxin-responsive protein 258 373 - -
Glsi12g2342 385 Pfam AUX/IAA family 169 372 IPR033389 -
Glsi12g2342 385 SUPERFAMILY CAD & PB1 domains 264 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2342 Glsi-ChrGlsi12 37698541 37701262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2342 266 372 B3 DNA Binding Superfamily AT1G59750 33.645 6.83e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi12g2342 AUX_IAA 1.1e-60 CL0072