Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2337 ATGGCTGGTCCGGTCCCTCAAACCAACTTAAATTATGAAGAAGTTCATATTTGTGGCATGTTAAACAACTGCCAACTTCCAACACTACCTTGTTCTTCCGACACCACCACCACCATCACCATGGCAGCTTCTGCTGCTGCGGCCATAGGCTCCTCATTTTCTTCCTCTATTAATACTCTCAAATGTCTCCGCTCCAAGAACTCGTCCTTAGATCCTCTTTTCAGAATCTCATCAACCCGCATGTTAGCGTCTGTGCCACAATCCTTCTTTCTGGAACCTCTTTCTATTGCTACCAATTTCCACAAGTTGTGGGTGCCTAGGATTTCTGCACAAGAGATGGCACTGGTCGATGAGGTTGATGCTGGTTTAGTTGAAGACAAGGCGGAGGGAGAAGATTCTGGAGAAGGAGATGCCGAAGGAGTCTCTGTCAACACTAAGCTTTATTTTGGAAATTTGCCGTACAGTGTTGACAGTGCGCAACTTGCGGGGATAATTCAGGATTATGCCAGCCCAGAACTCATTGAGGTTCTTTACCACAGGGAAACTGGAAAAAGCAGAGGGTTCGCATTTGTGACAATGAGTAGTATCGAAGACTGCAAAGAAGTAATAAAAAATCTTGATGGAAGTGAATTTATGGGTCGAACCTTGCGGGTGAACTTCTCTGACAAACCTAAACCAAAAGAACCCTTATACCCTGAAACTGAACATAAGCTCTTTGTTGGGAACTTGTCATGGTCAGTAACTTCTGAGAGTCTGACACAAGCATTTCAAGAATATGGACATGTGGTTGGAGCTAGAGTCTTATATGATGGGGAAACTGGAAGGTCTCGTGGTTACGGTTTCGTTTGCTATTCAACCGAATCAGAAATGGACACTGCCCTTGCATCTTTGAATGGAGTGGAACTAGAAGGACGGGCAATGCGTGTGAGCTTGGCTGAAGGCAAAAGATCACAAGGTTAA 960 0.4479 MAGPVPQTNLNYEEVHICGMLNNCQLPTLPCSSDTTTTITMAASAAAAIGSSFSSSINTLKCLRSKNSSLDPLFRISSTRMLASVPQSFFLEPLSIATNFHKLWVPRISAQEMALVDEVDAGLVEDKAEGEDSGEGDAEGVSVNTKLYFGNLPYSVDSAQLAGIIQDYASPELIEVLYHRETGKSRGFAFVTMSSIEDCKEVIKNLDGSEFMGRTLRVNFSDKPKPKEPLYPETEHKLFVGNLSWSVTSESLTQAFQEYGHVVGARVLYDGETGRSRGYGFVCYSTESEMDTALASLNGVELEGRAMRVSLAEGKRSQG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2337 319 Gene3D - 226 319 IPR012677 -
Glsi12g2337 319 Gene3D - 116 225 IPR012677 -
Glsi12g2337 319 PANTHER OS02G0815200 PROTEIN 68 316 - -
Glsi12g2337 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 314 IPR000504 GO:0003723
Glsi12g2337 319 SUPERFAMILY RNA-binding domain, RBD 229 316 IPR035979 GO:0003676
Glsi12g2337 319 CDD RRM2_NsCP33_like 237 312 - -
Glsi12g2337 319 FunFam 28 kDa ribonucleoprotein, chloroplastic 227 318 - -
Glsi12g2337 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 307 IPR000504 GO:0003723
Glsi12g2337 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 217 IPR000504 GO:0003723
Glsi12g2337 319 SUPERFAMILY RNA-binding domain, RBD 144 227 IPR035979 GO:0003676
Glsi12g2337 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Glsi12g2337 319 SMART rrm1_1 146 219 IPR000504 GO:0003723
Glsi12g2337 319 SMART rrm1_1 237 310 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2337 Glsi-ChrGlsi12 37674418 37677819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2337 145 315 Eukaryotic Initiation Factors Gene Family AT3G16380 31.720 1.81e-16 78.2