Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2329 ATGTTGCAGGATGTCATCCACCCGCCACCGCCACCGTCACCGTCACCTCCACAGGCGGAGCAACTTCCCAATATTACACAACTGACTAGACTATGCAACAAACCAGAGTTACATGAAGAATGTCTCATTGGGGTTTTGTGCATTGATTTATTTTGCTTTCTTCTAGGCGAAGATGGAGAAATTTTGGAGTTCATGTTGTTTACAATGCTTTTATATTATTTATGGCAGGAGGAAATTTCAAGCCCAATTAGTGCTCGAATTTTCGAGCTTTGTGACCCTGAGTTGTTCCCAGAGACGTTGCAGAATTCTGAGGTTACCTCCAGCTCAACCTGCTGCTACGAAGAGAACTCCTCCTACACCACAAATATATCTCTAGCTTTAGATGCAGACAATAAGTTCAATAGCAATAGCAATACAATCACCACCCCAACTAGCACAACTGCAACCAGCACCAGCACCACCACCGCCACAAACAACAATACGACCAACAATAGTAACCTGTCTATTATCTTTGACTCCCAAGATGAAATTGACAATGACATTTCTGCCTCCATAGACTTCTCATCATCTCCAGCTTTCTCTGTGCCCCCATTTCTCCCAGTTACAACTCAACAGGAACAATTTGATTTCTCTTCTTTGCAGCCTCAGGTCCCAATGGCAGCAAGTTCAGTTGTGGAAGGCCTCCCTCAATATCACACTGAGTCTGTTGCACCTCTTATGGGAGGTCCATTAGCATCTGTTTTTGAAGAGGATTGCTTATCTTCAGTCCCTTCTTATGTGCCTTTGAACCCTTCATCTCCTTCTTGCTCTTATCTCAGTCCTGGCATAGGACCTTACATGCCTCTTGGTTCCATTAATACTGCTGCCTTATCTGCTGATAGTTCTGGGATATTTGGTGGGAGCATTCTTCTGGGTCCCGAACTGCAGACACAAGAATTGGATTACCAGGGAGAAAATTGTGGAATTTATTGTCCAGATTCAATTCAGCGGGTGTTTAACCCTTCAGACCTCCAGGCACTTGGTGCCGAGAGTCAGCAACTGGTAGCTGGGGCTGGGAGTTCCACCCCTTTGACACCAGAAATATCAAACTTGGAGGATTCTACCTTCAAAGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATTCATAGATACATGAAGAAAAGGAATGAGAGAAACTTCAGCAAGAAGATCAAGTATGCCTGCCGCAAAACTCTGGCAGATAGCCGACCTCGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAAGCCCATAGACCTGCTGGTAGCAATCATGAAGAAGACGATGAAGAAGATGTAGTTGTGAAGGAAGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA 1434 0.4414 MLQDVIHPPPPPSPSPPQAEQLPNITQLTRLCNKPELHEECLIGVLCIDLFCFLLGEDGEILEFMLFTMLLYYLWQEEISSPISARIFELCDPELFPETLQNSEVTSSSTCCYEENSSYTTNISLALDADNKFNSNSNTITTPTSTTATSTSTTTATNNNTTNNSNLSIIFDSQDEIDNDISASIDFSSSPAFSVPPFLPVTTQQEQFDFSSLQPQVPMAASSVVEGLPQYHTESVAPLMGGPLASVFEEDCLSSVPSYVPLNPSSPSCSYLSPGIGPYMPLGSINTAALSADSSGIFGGSILLGPELQTQELDYQGENCGIYCPDSIQRVFNPSDLQALGAESQQLVAGAGSSTPLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGEAHRPAGSNHEEDDEEDVVVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2329 477 MobiDBLite consensus disorder prediction 418 436 - -
Glsi12g2329 477 MobiDBLite consensus disorder prediction 1 20 - -
Glsi12g2329 477 Pfam CCT motif 379 421 IPR010402 GO:0005515
Glsi12g2329 477 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 105 437 IPR045281 GO:0009909
Glsi12g2329 477 ProSiteProfiles CCT domain profile. 379 421 IPR010402 GO:0005515
Glsi12g2329 477 MobiDBLite consensus disorder prediction 1 19 - -
Glsi12g2329 477 MobiDBLite consensus disorder prediction 418 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2329 Glsi-ChrGlsi12 37616069 37619626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2329 359 432 C2C2-CO-like Transcription Factor Family AT5G24930 39.189 3.46e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi12g2329 CCT 6.6e-19 CL0281