Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2318 ATGTTTAGTTCCATTGGGCACTCTCTCTTTCTCACTCTCTACCTAGTCGGCCACACAAACCCTCTCTTCCTCTTCGCCCTCTACCTCCCAATCCCGGACCCAAAACCTACCCAAAATCCCAACGACAAATTTCTGCAGAAATTGAAATTCAGAGACAGAGAGGGAGAGAGAGCGTTAGAGAGCGAGAGCGGAATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATATCGTGGGATACGACGGAGGATAAGCTTAAAGAGCATTTCAGCAACTATGGCGATGTTATGCACACTTCCGTTATGAGGGAGAAGAACACTGGAAAGCCCAGAGGTTTTGGATTTGTGGTGTTTGCAGATCCCTCGATTCTCGATAGGGTTCTCGAGGACAAGCACGTAATCGATGGGAGAACGGTAGATGCCAAGAAAGCCTTCTCAAGAGAGGATCAACAAATTTCTGCCCCTTCCAGAGCTGGAAATCCTAACTCTGCTAGAAATTCTGGAAATGGTGGAAATATCAGAACCAAAAAAATTTTTGTTGGAGGGTTGCCTCCTACCTTGACTGAAGAGAAGTTTCGTCAGTACTTTGAGGCTTATGGCCATGTAACTGATGTAGTAGTCATGTACGATCAGAATACTGGACGGCCTCGCGGATTTGGGTTTATTTCCTTTGACACTGAAGATGCAGTTGACAGGGTTTTGCATAAGCCATTTCATGATTTAAACGGTAAGCAAGTAGAAGTGAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGTACTATGGGTGGTTTAGGAGGTAGTGGTGCTGGAATGGGTGGTTATCAGGGATATGGGACATCTGGTGGCAACCAAAATGCATATGATGGTCGGATGGATTCTGGTAGGTATATGCAGCCTCAAAGCACTGGTGGTGGATTTCCACCTTATGGTTCTTCTGGGTATAGTGCTCCTGGGTATGGGTATGGTCCTGCTAATAATGGCATTGGGTATGGTGGATATGGAAGCTATGGAGGTGCAAGCGCTGGGTATGGTGGACCTGCTGGGGCAACCTATGGGAATCCAAATGTCCCTAATGCTGCCTATGCTGGTGGTCCACCGGGTGCAGCAAGGAGTTCATGGCCTGCTCAAGCTCCCTCTGGTTATGGTTCTATGGGTTATGGGAATACTGCTGCTTGGGGTGCTCCTGGTGGAGGTGCTGGCTCTGGTGGCAGTGGCCCTGGTTCAGCACCTGCTGGTCAATCACCTAGTGGGGCTGCTGGTTATGGGAATCAAGGTTACGGGTATGGTGGATATGGTGGATATGGTGGAAGTGATAGTTCTTATGGGAACCCAGGTGTATATGGTGCTGTTGGAGGGCGTTCTGGGAGTGCCCAAAACAGTAATGCTAGTGGTCCTGGAGGGAGTGAACTACAAGGGAGTGGTGGCAGCTACCCTGGAAGTGGCTATGGTGATGCAAATGGAAATTCCGGATATGGAAATGCAGCATGGAGATCTGAACCTGGACAAGCATCTGGAAATTATGGGACTCAGGGAAATGGCTCTCATGGTGGGCAAGTTGGTTATGGCAGTGGCTATGGTGGTGCCCAGTCCCGACAAGCCCAACAGCAGTAA 1623 0.4923 MFSSIGHSLFLTLYLVGHTNPLFLFALYLPIPDPKPTQNPNDKFLQKLKFRDREGERALESESGMDSDQGKLFIGGISWDTTEDKLKEHFSNYGDVMHTSVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKKAFSREDQQISAPSRAGNPNSARNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKPFHDLNGKQVEVKRALPKDANPGASGRTMGGLGGSGAGMGGYQGYGTSGGNQNAYDGRMDSGRYMQPQSTGGGFPPYGSSGYSAPGYGYGPANNGIGYGGYGSYGGASAGYGGPAGATYGNPNVPNAAYAGGPPGAARSSWPAQAPSGYGSMGYGNTAAWGAPGGGAGSGGSGPGSAPAGQSPSGAAGYGNQGYGYGGYGGYGGSDSSYGNPGVYGAVGGRSGSAQNSNASGPGGSELQGSGGSYPGSGYGDANGNSGYGNAAWRSEPGQASGNYGTQGNGSHGGQVGYGSGYGGAQSRQAQQQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2318 540 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 65 540 - -
Glsi12g2318 540 MobiDBLite consensus disorder prediction 486 521 - -
Glsi12g2318 540 FunFam Heterogeneous nuclear ribonucleoprotein 1 69 151 - -
Glsi12g2318 540 CDD RRM1_hnRNPA_hnRNPD_like 72 142 - -
Glsi12g2318 540 CDD RRM2_Hrp1p 177 254 - -
Glsi12g2318 540 SMART rrm1_1 71 142 IPR000504 GO:0003723
Glsi12g2318 540 SMART rrm1_1 177 249 IPR000504 GO:0003723
Glsi12g2318 540 MobiDBLite consensus disorder prediction 144 176 - -
Glsi12g2318 540 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 146 IPR000504 GO:0003723
Glsi12g2318 540 FunFam heterogeneous nuclear ribonucleoprotein 1 171 294 - -
Glsi12g2318 540 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 253 IPR000504 GO:0003723
Glsi12g2318 540 MobiDBLite consensus disorder prediction 457 479 - -
Glsi12g2318 540 Gene3D - 58 154 IPR012677 -
Glsi12g2318 540 Gene3D - 174 257 IPR012677 -
Glsi12g2318 540 MobiDBLite consensus disorder prediction 401 420 - -
Glsi12g2318 540 MobiDBLite consensus disorder prediction 149 173 - -
Glsi12g2318 540 MobiDBLite consensus disorder prediction 450 540 - -
Glsi12g2318 540 SUPERFAMILY RNA-binding domain, RBD 64 173 IPR035979 GO:0003676
Glsi12g2318 540 SUPERFAMILY RNA-binding domain, RBD 175 283 IPR035979 GO:0003676
Glsi12g2318 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 244 IPR000504 GO:0003723
Glsi12g2318 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 139 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2318 Glsi-ChrGlsi12 37542939 37547149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2318 72 264 Eukaryotic Initiation Factors Gene Family AT2G23350 22.596 3.94e-08 54.3