Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2312 ATGTCAGATAGAATGTGCCTGGGTGGTGCAGAGCACAGAAAGCTCAAGCGCAAGATTGAGGAGGCCGAGTCAGAGTATCTACTGACTCTGAGGCTTGGCAACAACGGCATGGTGGGTGAATCCCCATCATCAAAGGGCTCTGGAGATTCTCAGCGAGTGGAGGAGGCGAATCCGCGCCAATTTCCCTGCAAATATTGCAGCAAGAAGTTCCAGAGCTCTCAAGCTCTGGGTGGACACCAAAATGCTCATAGGCGTGAGCGAGTGCTCTCAAAGATTGACAAGGAGCTGGATATGGGCACTTTTGGTGCTCACTTTTGCCCATATTCAGCCGTGCCAAATCTTCGTTTTTATCGGGGGGCAGCAGGGCCTCATCACATGCACCCGAACCACCCATTAATGCCTGCCAATGCCATGTCCTGGCCTCGTTTTGGGCACGGGTACGGCAACTCACCCCTCGAGGCGAACCGGTTTGGGATGAGGAGCTCATGGGATGGAGTTCGACCCAGATTGAATGGCAGAAATACCGGAGTGGATCAGAGTGCTTCAAATGCAAATGCTAACCCAGGTGACTGTGGTGGTGGTGGAGACGACGCCAACTGCATCACAGACCAAAACCAGACCCTCACTCCCGACCTCCATCCTGATCCTGCTCCGGCATCCTCCTTCCCCTCCCGCGACTCCAAGAGGCGGAAGATGTGCCCCAAGGCTCTCCACAACATCCAACACACTGTGCCCCCCAATCCAACCTCCGCCTTCACTTTCGACACCAAACCCACTGCCTCTGCACCCCAAGTCACACCCAAATTCGGATCCTTCAACTCCGGCAACGCCCAAGGATCAGCCTTGCCTCAAGAAGCAGCCGGTGTATTTAAGGTTGTTGAAGTTGAAGGGGTTGAATTGAGCGGCACATAA 912 0.5439 MSDRMCLGGAEHRKLKRKIEEAESEYLLTLRLGNNGMVGESPSSKGSGDSQRVEEANPRQFPCKYCSKKFQSSQALGGHQNAHRRERVLSKIDKELDMGTFGAHFCPYSAVPNLRFYRGAAGPHHMHPNHPLMPANAMSWPRFGHGYGNSPLEANRFGMRSSWDGVRPRLNGRNTGVDQSASNANANPGDCGGGGDDANCITDQNQTLTPDLHPDPAPASSFPSRDSKRRKMCPKALHNIQHTVPPNPTSAFTFDTKPTASAPQVTPKFGSFNSGNAQGSALPQEAAGVFKVVEVEGVELSGT 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2312 303 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 43 122 IPR044246 GO:0009788
Glsi12g2312 303 Gene3D Classic Zinc Finger 47 98 - -
Glsi12g2312 303 MobiDBLite consensus disorder prediction 36 54 - -
Glsi12g2312 303 MobiDBLite consensus disorder prediction 34 58 - -
Glsi12g2312 303 MobiDBLite consensus disorder prediction 168 230 - -
Glsi12g2312 303 Pfam C2H2-type zinc finger 61 86 - -
Glsi12g2312 303 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Glsi12g2312 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Glsi12g2312 303 MobiDBLite consensus disorder prediction 173 187 - -
Glsi12g2312 303 SUPERFAMILY beta-beta-alpha zinc fingers 58 88 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2312 Glsi-ChrGlsi12 37472259 37475539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2312 55 109 C2H2 Transcription Factor Family AT1G24625 60.714 4.09e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi12g2312 zf-C2H2_6 1.4e-07 CL0361