Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2296 ATGGAACAACAATCACTCCTGCACACTAGTGATCATAGCCGTACTCGTGGAAGTAATCCCATGCTCCCCGGACCCACCATACACACCACTCTAACCCTTAACTTAACTCGCTGCATCACCCGTCTGATCGCAGGTGAGCACCACCGGATTCTCCTCGGCGACTGTATGGAGCGTCCATCGGAGGACGATGATGATCGACCCATTGAGGACAGCAGTTGCGCCTATTCGAGGTCCATTTTGGTTCTGGACCTATTATGGAACCTAGCCTTCGTACTGGTCGCTGCTGGGGTCCTTCTTTCCACATTGAGCGAGCGCCCGTCGACTCCTTTGAGGTTCTGGCTCTGTGGGTATGCTTTTGAGTGTATTCTGCATATGGGTTTTGTGTATTTCGAGTATCGGAGGAAGACTAACTATTTTCACGGTGCTGAGCTCGGACTTTCAATGTCTCAGAGTCAGAACAGCATTGTGAAGAAGTTAGAGTCTATGAACACACTGGCATCATCAATTTGGTGGGTCTTTGGATTTTATTGGATTGTTGTGGGTGGCCAACCATTGTTGCAAGATTGTCCTCGTCTCTACTGGTTAACGGTGGTCTTTCTAGCCTTTGATGTATTTTTTATCATCTTTTGCGTTGGGATGGTATGTATAATTTTCTTTGCTCTCTTCTGTTTCATCCCAATAGTAGCATTAGCTTATGCTATGAGAATCAGAGAAGGTGCATCTGAAGAGGACATCAGGTCTCTTCCTAGGTATAAGTTTAGTCAGTCAAATTCGTTGGTGATGGTTGATGATGGTAAGAAGCAAGTTGTTAAAGCAAGAATGGATGCAGGCAATAGCAACCATGGCAGTGAATTATATCTTAACCCCGATGATTCTGAATGCTGCATCTGCCTTTCTCCATATGTAGATGGAGCAGAATTGTATCGCCTTCCCTGTACACACCATTTTCATTGTGGATGCATTACCAGATGGCTTCGGACAAAAGCAAACTGTCCTCTCTGCAAATTTAATATCCTCAGAGGTGATACATTGGTTTGA 1038 0.4528 MEQQSLLHTSDHSRTRGSNPMLPGPTIHTTLTLNLTRCITRLIAGEHHRILLGDCMERPSEDDDDRPIEDSSCAYSRSILVLDLLWNLAFVLVAAGVLLSTLSERPSTPLRFWLCGYAFECILHMGFVYFEYRRKTNYFHGAELGLSMSQSQNSIVKKLESMNTLASSIWWVFGFYWIVVGGQPLLQDCPRLYWLTVVFLAFDVFFIIFCVGMVCIIFFALFCFIPIVALAYAMRIREGASEEDIRSLPRYKFSQSNSLVMVDDGKKQVVKARMDAGNSNHGSELYLNPDDSECCICLSPYVDGAELYRLPCTHHFHCGCITRWLRTKANCPLCKFNILRGDTLV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2296 345 PANTHER TARGET OF ERK KINASE MPK-1 72 339 - -
Glsi12g2296 345 SMART ring_2 294 334 IPR001841 -
Glsi12g2296 345 Pfam Ring finger domain 293 335 IPR001841 -
Glsi12g2296 345 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Glsi12g2296 345 MobiDBLite consensus disorder prediction 1 25 - -
Glsi12g2296 345 SUPERFAMILY RING/U-box 287 339 - -
Glsi12g2296 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 341 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2296 Glsi-ChrGlsi12 37346286 37350106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2296 74 342 C3H Transcription Factor Family AT1G68070 48.214 5.82e-94 281