Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2294 ATGGAACACAGTTTGGGTCAAGACTCTATTCCTTCGCCTCGCTCCGTTGATAAGTCCAGGGTTTTGAATGTTAAGCCACTGCGTGCTCTTGTTCCTGTATTCCCTTCACCATCTAACTCTTCTTCATCTTCAACTCTCCAAGGTGGCGCTCCCGTTGTTTATGTTTCTCCATCTGGTCCTTTCCCTCCTTGGGTTGCTCCCTTCTATCCAGCCTTCTTCTCTTCGGAGTCCCAGAGGATCTCCCAACAAAACCCACAAATGCCAATATCTACCGCAGTTCCAATTAATTCACTTAGGACACCACCATCATCCAGAGCTGGGGCTGCTGCAAATGGAAACGTGGGAAATCAAAGTACCTTTGAGATGCATGAAGCCGATACAGAAGATGGAACTAGAGTAGAGAAGCTAAGGCACAAGTCACAGAAGAAGATGAAGAAGAGCGGTGGTTCTGCATCAGCTGATGTTGATGTGGATACACTGGTTAATGATATTCTCAAATCAAGTAATCCCATAGTTTTCAGTACATTGAATCAAACTTATGGTGGCAAGGATTCGGTTGCCTATACACTTCTGATATATGAAGTGATAAGAAGAAAGATCACACAAATTGAAGAGACAAAGGAAGGGAATGTTGGAGTTGCAAAGCGATCTGATTTAAAAGCAGGTACAATTATGATGAATCAAGGGATTCGGACAAATAGCAAGAGACGCATTGGAGCTGTGCCTGGTGTTGAAATTGGGGATATTTTCTTTTTTAGGATGGAATTGTGCTTGGTGGGATTGCATGCTCCATCTATGGCTGGAATTGATTACATGAGTGCCAAAGGCAGTCAAGAGGAAAAGCCATTAGCTGGCCCTGCATATTTTACTTACTATCCTACTCTCAGGAATTTGAAGCCAATAAATCCTATGGAACCTTCTACTGGATCTGGATGTAATTGTATTGGGGGATGCCTTCCTGGCAATTCCAACTGTCCTTGCGTTCAAAAGAATGAAGGCTATCTCCCATATTCTGCAAATGGGGTAGTCATGGACCTAAAATCTGTGATATATGTGTGTGGTCCTTCTTGTCAGTGTCCTCCTAATTGTCGTAACCGGGTTTCGCAAGGTGGCTTGAAAATTCGTTTGGAGGTGTTTAAAACTAAGGATAAAGGTTGGGGTCTAAGATCCTGGTACCCTATTCGTGCAGGAACTTTTATATGTGAGTATGCAGGGGAAGTGATGGATAAAGCTCAGGTAGAGGAGCTTGATGGTGAAAATAAAGATGACTACATTTTCAATTCTACCCGCACTTATCAGCAACTGGAAGTTCTTGCTACTGATACTGAGGCACCAAAGATCCCATATCCCTTCTATATAACAGCAAGAAATAATGGGAATGTGGCTCGGTTTATGAACCACAGCTGCTCTCCAAATGCATTTTGGCGGCCAATCTTACGTGCAAATAAAGATGAGTCTGATCTCCACATCGCATTCCATGCAGTTAGACATATCCTCCTATGA 1503 0.4318 MEHSLGQDSIPSPRSVDKSRVLNVKPLRALVPVFPSPSNSSSSSTLQGGAPVVYVSPSGPFPPWVAPFYPAFFSSESQRISQQNPQMPISTAVPINSLRTPPSSRAGAAANGNVGNQSTFEMHEADTEDGTRVEKLRHKSQKKMKKSGGSASADVDVDTLVNDILKSSNPIVFSTLNQTYGGKDSVAYTLLIYEVIRRKITQIEETKEGNVGVAKRSDLKAGTIMMNQGIRTNSKRRIGAVPGVEIGDIFFFRMELCLVGLHAPSMAGIDYMSAKGSQEEKPLAGPAYFTYYPTLRNLKPINPMEPSTGSGCNCIGGCLPGNSNCPCVQKNEGYLPYSANGVVMDLKSVIYVCGPSCQCPPNCRNRVSQGGLKIRLEVFKTKDKGWGLRSWYPIRAGTFICEYAGEVMDKAQVEELDGENKDDYIFNSTRTYQQLEVLATDTEAPKIPYPFYITARNNGNVARFMNHSCSPNAFWRPILRANKDESDLHIAFHAVRHILL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2294 500 SMART G9a_1 234 334 IPR003105 -
Glsi12g2294 500 SUPERFAMILY SET domain 285 498 IPR046341 -
Glsi12g2294 500 Pfam Pre-SET motif 282 366 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi12g2294 500 MobiDBLite consensus disorder prediction 123 152 - -
Glsi12g2294 500 ProSiteProfiles Pre-SET domain profile. 310 371 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi12g2294 500 SMART set_7 374 499 IPR001214 GO:0005515
Glsi12g2294 500 Gene3D SET domain 272 499 IPR046341 -
Glsi12g2294 500 SMART preset_2 273 358 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi12g2294 500 Pfam SET domain 385 498 IPR001214 GO:0005515
Glsi12g2294 500 ProSiteProfiles SET domain profile. 374 500 IPR001214 GO:0005515
Glsi12g2294 500 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 103 283 - -
Glsi12g2294 500 Pfam SAD/SRA domain 238 276 IPR003105 -
Glsi12g2294 500 SUPERFAMILY PUA domain-like 221 276 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2294 Glsi-ChrGlsi12 37337498 37339455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2294 285 498 Su(var)3-9 homologs AT1G73100 48.889 7.44e-69 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi12g2294 SET 1.6e-11 No_clan