Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2269 ATGGGGAGGAAGCGAAAGCTCGAGCTCAAATCTACCGAATCCGTCGAATCCCCATCGAAGCAACAACAGCAAGAAGAGCAGGTCGTACAGGGAGAGACCCAATTGCAACGAGACATAAATGCCGAAGGCCAAGCAAATGAAGCTGAGTACGAGGAAGTTGCGGAAGAAGTAGAAGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGACGAAGCGGACGATGACAACGGCCATCCCGATCATGCCCATACGAATGACCAGACATCGAAGGCGCCATCAACGTCTTTTCCTGCAACATCACTGGTGAATAGAGATGGAAAGGATGACGACGACGACGACGAGCCGATACAGAAAGTTCTAGAACCGTTCAGTAAGGAACAAATTGTAAACTTGCTATTCGAAGCGGCGGCTAAACATCGTGATGTAGCGAATCGGATCCGCAGGGTAGCTGATGAGGACCCTGTTCACCGGAAAATCTTCGTACATGGCCTCGGATGGGACACAAACGCGGAGAGCCTCGTTAACTCTTTCAAGCAGTATGGAGAAATTGAAGATTGTAAGGCTGTATGTGATAAGATATCAGGGAAATCCAAGGGCTATGGTTTCATCCTTTTCAAGACGCGTCGTGGGGCTCGCAATGCGCTGAGGGAACCACAGAAGAAGATTGATAACCGGATGACGGCCTGCCAACTGGCGTCGGTTGGCCCGAGTCAACAGCCAACTGCCGCACAACCAGCTCCGGCACCACCTGTATCCGAGTATGCCCAAAGAAAGATCTTCGTGAGCAATGTTGGGGCCGATTTGGATTCTCAGAAGTTGCTAATGTTCTTCTCGAAGTATGGAGAGATAGAGGAAGGACCACTGGGACTTGATAAGGTAACTGGGAAACCGAAAGGGTTCTGTTTGTTTGTGTATAAGAGTATTGAAAGTGCCAAAAAGGCGTTGGTAGAGCCACACAAGGAATTGGAGGGTCAAATTTTGCACTGTCAGCAAGCAATCGATGGTCCGAAACCAGGAAAGTCCCAACATCAGCAACATAAGAATCCTCACAAAACCCAATTCCAGAGACATGAGAACCCTAGCTATGTTGGTGGGGCCGCCATTGCACCAGGGCAGTTGATGGCGCCAGCGGGACCAGGAATTGGATTTAACCAGGGGGCAGCGGCTGCACAGACGCTGAATCCGGCTCTTGGGCAGGCATTGACAGCACTGCTTGCAACTCAGGGTGCTGGCTTGGGATGGACTAATTTGTTGGGAAGCCTAGGATCAGCTGCTGGGGGTACGGAAGTCAAGTTGGATTGCAGGGGGCATATCCAAATCAGCAGATAG 1350 0.5059 MGRKRKLELKSTESVESPSKQQQQEEQVVQGETQLQRDINAEGQANEAEYEEVAEEVEEEEEEEEEEEEEEEEEEEDEADDDNGHPDHAHTNDQTSKAPSTSFPATSLVNRDGKDDDDDDEPIQKVLEPFSKEQIVNLLFEAAAKHRDVANRIRRVADEDPVHRKIFVHGLGWDTNAESLVNSFKQYGEIEDCKAVCDKISGKSKGYGFILFKTRRGARNALREPQKKIDNRMTACQLASVGPSQQPTAAQPAPAPPVSEYAQRKIFVSNVGADLDSQKLLMFFSKYGEIEEGPLGLDKVTGKPKGFCLFVYKSIESAKKALVEPHKELEGQILHCQQAIDGPKPGKSQHQQHKNPHKTQFQRHENPSYVGGAAIAPGQLMAPAGPGIGFNQGAAAAQTLNPALGQALTALLATQGAGLGWTNLLGSLGSAAGGTEVKLDCRGHIQISR 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2269 449 SMART rrm1_1 165 237 IPR000504 GO:0003723
Glsi12g2269 449 SMART rrm1_1 265 337 IPR000504 GO:0003723
Glsi12g2269 449 MobiDBLite consensus disorder prediction 14 41 - -
Glsi12g2269 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 246 IPR000504 GO:0003723
Glsi12g2269 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 342 IPR000504 GO:0003723
Glsi12g2269 449 Coils Coil 40 82 - -
Glsi12g2269 449 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 48 346 - -
Glsi12g2269 449 SUPERFAMILY RNA-binding domain, RBD 163 247 IPR035979 GO:0003676
Glsi12g2269 449 MobiDBLite consensus disorder prediction 48 82 - -
Glsi12g2269 449 MobiDBLite consensus disorder prediction 343 363 - -
Glsi12g2269 449 MobiDBLite consensus disorder prediction 1 122 - -
Glsi12g2269 449 MobiDBLite consensus disorder prediction 93 108 - -
Glsi12g2269 449 Gene3D - 251 368 IPR012677 -
Glsi12g2269 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 232 IPR000504 GO:0003723
Glsi12g2269 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 332 IPR000504 GO:0003723
Glsi12g2269 449 Gene3D - 152 247 IPR012677 -
Glsi12g2269 449 SUPERFAMILY RNA-binding domain, RBD 246 359 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2269 Glsi-ChrGlsi12 37171713 37173147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2269 262 349 C2H2 Transcription Factor Family AT2G19380 40.449 5.53e-12 65.9