Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2242 ATGGGGAGACCTCCTTGCTGTGACAAAGTTGGCATCAAGAAGGGTCCATGGACACCTGAGGAGGACATCATCCTTGTTTCTTACATCCAAGAACATGGTCCGGGAAATTGGAGATCAGTACCCACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACTAACTACCTCAGGCCAGGAATTAAGAGAGGGAACTTCACTCCCCATGAGGAAGGAATGATAATTCACTTGCAAGCTCTAATGGGTAACAAATGGGCAGCCATAGCTTCTTACCTTCCTCAAAGAACAGATAACGATATAAAGAATTATTGGAACACCCATCTGAAAAAGAAGCTAAAGAAAATTCAGACAGCTTTGGACCCCCAACTGGCAGCAAACTCAACAACCTCTAGTCAGTTTGTATCAAAGAGCTTTAATGAGAGAACAAGTTTAGATGTCATGGGCAACCATGCCTCATCCCACAGGCTTAGTCAGTCTCAGTCATCAAACTATGCATCAAGCACTGAGAACATCTCCCGGCTCTTGGAAGGTTGGATGAGATCCTCTCCAAAGCCAGACACACAGGTTCACAACAACAACAATTACAGAAACTTCGAAAACATTAAGATAGTGAAGTCTGCATCAGTGCCTGCTCTAGATGAGCAAGAGGGTGGAGATATGATGTCCCATGAAGAGTTTGATTCTATTTTGTCGTATGAGAACCAAAACAATACTGCTTGGGACAAGTCCACTGGTGATTCTATGCCTGGAAAGAGTTCCGAAGCTGCTGCTGAGAAGGTTAACAAGCAAAGATCTGACAACACTGCTCCACCATTGTCATTTCTTGAGAAGTGGCTCTTGGATGAAAATGTCGGTCAAGTTGAGGAGATGATGGAATTATCCCCTATGTTCTAA 906 0.4393 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALMGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKIQTALDPQLAANSTTSSQFVSKSFNERTSLDVMGNHASSHRLSQSQSSNYASSTENISRLLEGWMRSSPKPDTQVHNNNNYRNFENIKIVKSASVPALDEQEGGDMMSHEEFDSILSYENQNNTAWDKSTGDSMPGKSSEAAAEKVNKQRSDNTAPPLSFLEKWLLDENVGQVEEMMELSPMF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2242 301 CDD SANT 69 112 IPR001005 -
Glsi12g2242 301 SMART sant 13 63 IPR001005 -
Glsi12g2242 301 SMART sant 66 114 IPR001005 -
Glsi12g2242 301 CDD SANT 16 61 IPR001005 -
Glsi12g2242 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Glsi12g2242 301 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi12g2242 301 MobiDBLite consensus disorder prediction 241 277 - -
Glsi12g2242 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Glsi12g2242 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi12g2242 301 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi12g2242 301 FunFam MYB-related transcription factor 13 66 - -
Glsi12g2242 301 Gene3D - 13 66 - -
Glsi12g2242 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi12g2242 301 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 231 - -
Glsi12g2242 301 Gene3D - 68 143 - -
Glsi12g2242 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi12g2242 301 FunFam Transcription factor MYB60 68 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2242 Glsi-ChrGlsi12 36951081 36952324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2242 1 298 MYB Transcription Factor Family AT5G62470 43.767 1.20e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi12g2242 Myb_DNA-binding 1.5e-15 CL0123