Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2236 ATGAGTTCACAACACTTCAAGAATTGCGGTGACGGTTTCAGTGGAGATATGAAGTTTTTACCTTCGGCTCCTCTTCTAGGTCCCCAACTTCCTGCGTCTAACACTTTTGGGGTTATGGGTCATTCAAGTGAGACAGGCTTTCGGATGTTGAGCCCTTCATTCCAGCCACAGGAGAGCAGAGGTACAAAGAGAACCAACGAAGAAGGTGACGGGTATTTTGGGGTTGAGAAAAAGAACTTGTCTTTGAAACTGGGTGAACAGGTAGAAACTGAGAGCTCTGATGCTGGAAAAAATGGGCACATCAAGCTCTGTGCTAGAGGTCACTGGAGGCCAGCTGAAGACGCCAAACTCAAAGAGCTGGTAGCTCAGTATGGTCCTCAAAACTGGAACTTGATTGCTGACCATCTCGAAGGAAGATCAGGCAAGAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAGAATCAACAGAAGAGCCTTCTCCGAGGAAGAAGAGGAGAGGCTGCTTGCTGCGCATAGAGCGTACGGTAACAAGTGGGCTATGATTGCTAGACTGTTTCCTGGAAGGACAGATAATGCAGTGAAGAACCACTGGCATGTGATCATGGCTAGGAAGCAGAGAGAGCAGTCAAATGTGTACAGAAGGAGAAAGCCCACCTCCGAAAGTATTCCAAAAGGACTAAACTTGACTCTAACAAACAATGCAGTAGGCAGTGAATCAAGCAACTCAAGCACCCGAGATGAGTCTGCTTCAACCTGCACTGATCTCTCCCTCACTCCCTCTTCGGCTAAACCAATTCCCAGGCTTTTCTCTAATCTGAGTCATGTTCAGAATTATCTGGGTGTATATGATGAAAGGGAGGTGAGAACTTGGGATGTGGGTTTTGACAAGTTTTTTGGTGGTTGGAATGGGTCGTGGGAGGCTGGAGGCATGCTGATGGTTAAGGGGGTGGATCAATCTAATTATTCAGATTCAAACTCAAACTCGGAAGTGTCGGTATCTGAGTCGGTTGCCACCAACAGGACCAATCTCTCAATTCCTGGGAAAAGAGAAAACGTAGGCGCCAAGACGATTGAGATGCCATTCATTGATTTTCTGGGAGTGGGGGCTGCATAA 1119 0.4701 MSSQHFKNCGDGFSGDMKFLPSAPLLGPQLPASNTFGVMGHSSETGFRMLSPSFQPQESRGTKRTNEEGDGYFGVEKKNLSLKLGEQVETESSDAGKNGHIKLCARGHWRPAEDAKLKELVAQYGPQNWNLIADHLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLLAAHRAYGNKWAMIARLFPGRTDNAVKNHWHVIMARKQREQSNVYRRRKPTSESIPKGLNLTLTNNAVGSESSNSSTRDESASTCTDLSLTPSSAKPIPRLFSNLSHVQNYLGVYDEREVRTWDVGFDKFFGGWNGSWEAGGMLMVKGVDQSNYSDSNSNSEVSVSESVATNRTNLSIPGKRENVGAKTIEMPFIDFLGVGAA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2236 372 Gene3D - 106 157 - -
Glsi12g2236 372 SUPERFAMILY Homeodomain-like 106 199 IPR009057 -
Glsi12g2236 372 MobiDBLite consensus disorder prediction 233 259 - -
Glsi12g2236 372 Pfam Myb-like DNA-binding domain 109 169 - -
Glsi12g2236 372 Gene3D - 159 226 - -
Glsi12g2236 372 ProSiteProfiles Myb-like domain profile. 153 203 IPR001005 -
Glsi12g2236 372 FunFam MYB transcription factor 106 157 - -
Glsi12g2236 372 MobiDBLite consensus disorder prediction 52 72 - -
Glsi12g2236 372 FunFam MYB transcription factor 159 227 - -
Glsi12g2236 372 PANTHER MYB PROTEIN-RELATED 106 249 - -
Glsi12g2236 372 CDD SANT 109 150 IPR001005 -
Glsi12g2236 372 CDD SANT 169 200 IPR001005 -
Glsi12g2236 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 207 IPR017930 -
Glsi12g2236 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 152 IPR017930 -
Glsi12g2236 372 ProSiteProfiles Myb-like domain profile. 106 152 IPR001005 -
Glsi12g2236 372 SMART sant 105 154 IPR001005 -
Glsi12g2236 372 SMART sant 157 205 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2236 Glsi-ChrGlsi12 36924003 36925397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2236 96 271 MYB Transcription Factor Family AT5G17800 61.749 1.90e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi12g2236 Myb_DNA-bind_6 1.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2236 12 36924003 36925397 Glsi12g2236 12 36924003 36925397 ECH