Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2235 ATGGAAGATCAGAGCCAGCAACCCAATAGTCCAAACCATGGCTCCGAGAGAAGTGAACCGGTGAGGTCAAGATGGACTCCAAAGCCTGAGCAAATCCTCATACTGGAGTCCATCTTCAACAGTGGTATGGTGAACCCCCCTAAGGAAGAGACCGTCAGAATAAGAAAGCTGCTTGAGAAATTTGGCTCTGTTGGCGATGCCAACGTCTTCTATTGGTTCCAGAACCGTAGGTCCAGATCCCGCCGCCGACAACGCCAGATGCAGGCCACCCTTGACCAAAGCAACCGCCTCCAACCTCAAGTTGCCGGTGCAATTCCCTTTGATCATCACACCACCTCTCCACCTACTGCTCTGCCTTTTGGTGCTTCTGCTTCACCATCTTATCTCCCCGGTTCCTCTTCATCATGCGCCCTCCTTCCAGCCCAAGAAGCCCTGGATGCTCTCTTTTCTGTCTCTCCTCAAATGAGTTTCCAGGAAATTGATCATTCTTCGCCTGCAACTTCTGTTTTATACCCTCCTGATGGCTCAACTTTGAACTACCATTCTGCAATTGGCCCTAAAAATTGTGGAATAGAGAACCAAAGCACTGACAAGGAGTTAACTGGATTCATCACAGTCTTCATCAATGGGGTTGCAACAGAAGTTCCAAGGGGACCAGTGGACATCAAAACAATGTTTGGGCAAGATGTAATGTTAGTTCATTCCTCTGGAGTGCCAGTTCCCACCAATGAGTTTGGTTTCTTGATGCAGAGCTTGCAGCATGGTGAAAGCTACTTTCTGTTCATTGAACCTTCAGTTTATAATTTCCTCCCAGAGATCATTAATCACCAGTCACTGCGTTACCCTCGTAATGGGCAAGGGAGAGACCAGTACTATACAATACGCGAATAA 891 0.4781 MEDQSQQPNSPNHGSERSEPVRSRWTPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQMQATLDQSNRLQPQVAGAIPFDHHTTSPPTALPFGASASPSYLPGSSSSCALLPAQEALDALFSVSPQMSFQEIDHSSPATSVLYPPDGSTLNYHSAIGPKNCGIENQSTDKELTGFITVFINGVATEVPRGPVDIKTMFGQDVMLVHSSGVPVPTNEFGFLMQSLQHGESYFLFIEPSVYNFLPEIINHQSLRYPRNGQGRDQYYTIRE 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2235 296 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677
Glsi12g2235 296 Pfam Homeodomain 22 82 IPR001356 GO:0003677
Glsi12g2235 296 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 262 IPR044558 GO:0003700|GO:0048830
Glsi12g2235 296 SMART HOX_1 20 87 IPR001356 GO:0003677
Glsi12g2235 296 MobiDBLite consensus disorder prediction 1 16 - -
Glsi12g2235 296 MobiDBLite consensus disorder prediction 1 25 - -
Glsi12g2235 296 SUPERFAMILY Homeodomain-like 16 89 IPR009057 -
Glsi12g2235 296 Gene3D - 22 90 - -
Glsi12g2235 296 FunFam WUSCHEL-related homeobox 11 22 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2235 Glsi-ChrGlsi12 36918033 36920633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2235 3 283 Wox Gene Family AT3G03660 50.159 9.57e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Glsi12g2235 Homeodomain 3.9e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2235 12 36918033 36920633 Glsi12g2235 12 36918033 36920633 ECH