Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2231 ATGTCGGAGAGAGATCCCGCTATTAGGCTCTTTGGCAGAAAGATTTCGTTGCCGGAATGTCAGATTCCGGCGAGCTCTTCTCACATTCCGTCCGACTCCGCTCCCGCGGATGCTAAGCCAGAAGTGGAAAAACCTTGTGCAGATAACTCTGAGCAACTAGAGAATTCATCTGACTTGAAGGACAGTAGTAAAGTGTGTGAGCATACTGAGGAGAAAAATGAGCCAAAAGTAAATCCCAAGCCCTTGGAAGATAAGATGGAGACGAGTAGTACAAATGAGGATAAAATGTTTAAGAAACCAGACAAAATTCAACAATGTCCACGATGCAACAGTTTGGACACAAAATTTTGTTATTTCAATAACTACAATGTCAATCAACCTCGACATTTCTGCAAGAACTGCCAAAGATATTGGACTGCTGGTGGAACAATGAGAAATGTTCCAGTGGGTGCTGGAAGACGAAGGAACAAGCACCTATCCTCACAATACCGCCATATTATGGTAGCCTCTGATGGAATCCAAACGACCAAGCTAGAAACCAGAGACTCATCTGGTCACCAACTTGTCTCAACACTTGAATCTTCGGCTGCTTTCAGGTCATCCACGGATGATGGTACCATATTGAAGTTTGGTCCAGATGCACCTCTCTATGACTCCGTGGATTCGATCCTTAATATTAGAGACCAGAAGAGGAGTTTTGATAAACCTTGCATCAATTGTGTAGAAAATGGGGAGGAGCCATCTTTATGTGGATCTTCTGTGACGAATGCTAGTGGTGCTCAGGGAAACGAGGTATCAGAACTTACGATGCAAAGGGACCCAAGTGTCTCTAATGAGCATAGTACATCAAATCGTCTGCACTGTTGCCCTGTTCCTCCATGGGTCTTTCCTTGTAATCCAGGTTGGAACAATGTGGCTTCCATGGCAGCAGCTAATCATAATCAAGCTTCCACCCCAGTGCAGTGGTATCCCCCACCTGCGGTGACAGTTCCAGGCATTTGCCCACCAAACATTCCTTTACAATTTGTGGCAGCACCATATTGGAGTGGCACCGTATGGGCTGCTGGAACAGGGACAGTTTCAATAGGATCTAATGGTTGCCTTTCGCCCTCCTCCTCTACCAGTAATAGCTGCTGCTCGGGCAATGGCTCCCCGTCCCTGGGCAAGCACTCTAGAGAAGAGAAATCAGAGAAGTGTGTTTTGGTTCCAAAGACCCTTAGAATTGATGACCCAAACGAGGCCTCAAGAATTCCTATATGGGCTACACTAGGTATCAATCCTGCCAAGCGTGAATCTGTATCAGAAGTTTCAATTTTGAGAAAACTAGAAGCTAAGGAGGAAGGCAAAGACCGTGCAATGGGTGTCTCTCGAATCTTAGAAGCTATTCCTGCAGCTATTTCTGGTGCTCATGCTGTTCACGAGAGCACATAA 1431 0.4577 MSERDPAIRLFGRKISLPECQIPASSSHIPSDSAPADAKPEVEKPCADNSEQLENSSDLKDSSKVCEHTEEKNEPKVNPKPLEDKMETSSTNEDKMFKKPDKIQQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRRNKHLSSQYRHIMVASDGIQTTKLETRDSSGHQLVSTLESSAAFRSSTDDGTILKFGPDAPLYDSVDSILNIRDQKRSFDKPCINCVENGEEPSLCGSSVTNASGAQGNEVSELTMQRDPSVSNEHSTSNRLHCCPVPPWVFPCNPGWNNVASMAAANHNQASTPVQWYPPPAVTVPGICPPNIPLQFVAAPYWSGTVWAAGTGTVSIGSNGCLSPSSSTSNSCCSGNGSPSLGKHSREEKSEKCVLVPKTLRIDDPNEASRIPIWATLGINPAKRESVSEVSILRKLEAKEEGKDRAMGVSRILEAIPAAISGAHAVHEST 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2231 476 ProSiteProfiles Zinc finger Dof-type profile. 104 158 IPR003851 GO:0003677|GO:0006355
Glsi12g2231 476 MobiDBLite consensus disorder prediction 255 283 - -
Glsi12g2231 476 MobiDBLite consensus disorder prediction 21 99 - -
Glsi12g2231 476 MobiDBLite consensus disorder prediction 37 99 - -
Glsi12g2231 476 MobiDBLite consensus disorder prediction 374 394 - -
Glsi12g2231 476 PANTHER CYCLIC DOF FACTOR 2 2 476 IPR045174 GO:0003700|GO:0006355
Glsi12g2231 476 ProSitePatterns Zinc finger Dof-type signature. 106 142 IPR003851 GO:0003677|GO:0006355
Glsi12g2231 476 Pfam Dof domain, zinc finger 101 158 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2231 Glsi-ChrGlsi12 36898550 36900924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2231 1 474 C2C2-Dof Transcription Factor Family AT3G47500 34.585 1.04e-63 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi12g2231 zf-Dof 2.1e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2231 12 36898550 36900924 Glsi12g2231 12 36898550 36900924 ECH