Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2228 ATGGTGTTCTGTGATCACTGTAGAAGAAATGTTTCCGGAATGCGACCGGACGATGGTTCCCTATGTTGTGAATTATGCGGGAAGGTGTTGGATGATTTGTATATTACTCAGGAGCCCACTTTTGTAAAGGATGGAGCTGGGCAGAGCAAATTATCAGGCCATTTTGTAAGAACAATTCAAAGTGAGTACTCTGCTTCACGCCAAAGGACATTAGATAGAGCTCTTGATGATATAAGATATCTAAGTTTCAGCCTTGGAGTAGAAGATACTAGTTTGGTCACACAAGCTTTGGCCTTTTATAAAATAGCAATTGAACGGAATTTCACCAGGGGGCGTAAATCAGAGCAAGTGCAGGCTGCTTGTCTCTACATTGCATTCCGAGAAAATAATAAGCCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAAATGTTTATGTGCTAGGTGCAGTTTTTTTACAGCTTTGTAAAGTATTAAGGCTCGAAGAGCACCCCATTGTTCAAAAACCTGTTGATCCTAGTCTATTTATTTTTAAATATACGAATAATTTGTTAAAGCAAAGGAATATGCTTGTCACTGAAACTGCATTGAGCATTGTTGCCAGCATGAAACGTGATTGGATGCAGACGGGGAGGAAACCTAGTGGCTTATGTGGTGCAGCATTGTACATATCTGCCCTTGCACATGGTTTTAAGTGCTCTAAGTCAGACATTCTCAGAATTGTCCATGTATGTGAAGCTACATTGACTAGGCGTTTGGTTGAGTTTGAGAATACAGACTCTGCGAGCTTGACAGTTGAGGAGTTAAATATGATGGCAAAAGAGCGTGAAAAAAATCCAATTGAAAAGCCAAATTGTGGATCAGGGGAATATACCTCAAAGGATCTACTGTGTGAACACAAGGATAGTGATGTGCCCCATTATGCGCTTGGATTATGTGAAACATGTTATAAGGATTTTGTTAAACTCTCCGGAGGACTTGATGGTGGGTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAGAGAATGACAAAATCACTTTATGAGGAAAGTGGCAATAATTCAAGTGATCTGGTGAAAGCATCAAATGGTGCATGTGCAAGTCAAAACGAAGAATTGCATGCTTTTAATCCAGAAAGCATTGGGGCTGATGTTGAGCACGTGGTGACTAAAAATGGTGGGCAAGATGAACTACATAAAGAAGATGATATGAGTGCAAAAATTCATGACGAATCAGAAAGTCTCTCTGATATTGATGATTTGGAGGTTGATGGCTACCTTCACAATGAGGAGGAGAAGCATTACAAGAAGATTATATGGGAAGAAATGAATCGGGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCGGCGGCGGCTGCTGCTAAGGAAGCTTTTGAGGCAAATTTTCAAAATTGTTCTGAGGATATGTTAGCAGCTAAAGAGCTTGCTGAATCCGCTGCTGCAGCTGTGGCAAAATCCAGAAAGGAAAGGAAGCAGAGACGTGCTCAAGAGGCAAAGAATTCTGGTCCTGCTCAATCTGCTGCAGAAGCTACCCGCAAAATGTTGATTAATAAGAGGCTCAGCTCCAAAGTCAATCTTGATCGCTTGGATGAGTTATTTGATGATACTGAGGCTCCTGAGAACCCCAAGAAAGTAAGATTTGAGCTGCACTCTGATCAGGGTAATTTAGAGCCTGAGCTGGAGGACAAAAACAAAGATGATAAGGGATCAGTTGATGAATTTGAGAGTGGAGGTGATATGTGCGAAGAAAGTTTGTATGAAGAAAATTTGGAGGAAGCATATGACTATGAAGACGATGATTATCGGTATGATGATTACTGA 1848 0.4107 MVFCDHCRRNVSGMRPDDGSLCCELCGKVLDDLYITQEPTFVKDGAGQSKLSGHFVRTIQSEYSASRQRTLDRALDDIRYLSFSLGVEDTSLVTQALAFYKIAIERNFTRGRKSEQVQAACLYIAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIFKYTNNLLKQRNMLVTETALSIVASMKRDWMQTGRKPSGLCGAALYISALAHGFKCSKSDILRIVHVCEATLTRRLVEFENTDSASLTVEELNMMAKEREKNPIEKPNCGSGEYTSKDLLCEHKDSDVPHYALGLCETCYKDFVKLSGGLDGGLDPPAFQRAERERMTKSLYEESGNNSSDLVKASNGACASQNEELHAFNPESIGADVEHVVTKNGGQDELHKEDDMSAKIHDESESLSDIDDLEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKEAFEANFQNCSEDMLAAKELAESAAAAVAKSRKERKQRRAQEAKNSGPAQSAAEATRKMLINKRLSSKVNLDRLDELFDDTEAPENPKKVRFELHSDQGNLEPELEDKNKDDKGSVDEFESGGDMCEESLYEENLEEAYDYEDDDYRYDDY 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2228 615 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 533 IPR000812 GO:0006352|GO:0070897
Glsi12g2228 615 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Glsi12g2228 615 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Glsi12g2228 615 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Glsi12g2228 615 MobiDBLite consensus disorder prediction 492 506 - -
Glsi12g2228 615 MobiDBLite consensus disorder prediction 543 615 - -
Glsi12g2228 615 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Glsi12g2228 615 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Glsi12g2228 615 MobiDBLite consensus disorder prediction 543 584 - -
Glsi12g2228 615 FunFam Cyclin/Brf1-like TBP-binding protein 410 460 - -
Glsi12g2228 615 Coils Coil 490 510 - -
Glsi12g2228 615 Gene3D - 173 264 - -
Glsi12g2228 615 Gene3D Single helix bin 393 460 - -
Glsi12g2228 615 MobiDBLite consensus disorder prediction 585 615 - -
Glsi12g2228 615 MobiDBLite consensus disorder prediction 492 521 - -
Glsi12g2228 615 FunFam Transcription factor IIIB subunit 173 262 - -
Glsi12g2228 615 SUPERFAMILY Cyclin-like 172 268 IPR036915 -
Glsi12g2228 615 Gene3D - 63 165 - -
Glsi12g2228 615 SUPERFAMILY Cyclin-like 75 163 IPR036915 -
Glsi12g2228 615 Pfam Brf1-like TBP-binding domain 418 543 IPR011665 -
Glsi12g2228 615 SMART cyclin_7 176 259 IPR013763 -
Glsi12g2228 615 SMART cyclin_7 76 158 IPR013763 -
Glsi12g2228 615 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Glsi12g2228 615 Pfam Transcription factor TFIIB repeat 69 157 IPR013150 GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2228 Glsi-ChrGlsi12 36867863 36881958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2228 1 524 Inorganic Solute Cotransporters AT2G01280 41.713 1.70e-112 343