Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2214 ATGTCGGAACCCGTTTCCAAATCCTGTAAATTCAATGAAGAAGGGAGAGGCCACAATACACCCGATCTCCTTCAGTGCGCAGAACTAATCCTCCCTTGGCTAACCCCTTTGGAACTTGCCAATGTCTCTTTGTCCTGCAAAGCATTGTACCAAATCTCCAAGAGCATCACTCTCCGCCGTTCATCTGACTCTTCTCGAGGATTCGAAAATTTGGCTATCCCATTTCGAAACACTGTCGATACTCACCCATACGCTTTCTTCATCTACACTCCTTCCCTAATTCTACCTTCTGCTTCACAACTTCTACGTCAATCTTGGGGTTCGAATTTTGCAGCCAGCCCCAACTGGGCTGCCGAGCTTGCTGTGGAAACAGTGACTTTGGTTGATGAGCTGGGTGAGAATGTATCTGGCTGTAACTGTGCCACTTGTGGGGATGTGGGGGATGAAGTTAACTGGTGCCCTTGTTCGAGCTTGGTTGGGTTGGATGTGGCGAGCGAGTGTGGACCGAGTTGTAGGTGCGGGTTGGATTGTGGAAATCGGTTGAGTCAGAAGGGGACTGCAGTTAGGTTGAAAATTGTGAGGGATAAGAGGAAAGGATGGGGTTTGTATGCTGACCAGTTGATTCAGAAAGGGCAGTTCGTATGTGAATATGCAGGTGAACTTTTGACAACCGAGGACGCAAGGAGGAGACATCAATATTATGATGAACTTGCTTCACACGGTGAATTTTCTTCTGCTCTTTTGGTTGTAAGGGAGCATCTGCCATCTGGAAAGGCATGTTTGAGAATAAACGTCGATGCCACAAGTATAGGAAATGTTGCACGGTTCATTAATCATTCTTGTGATGGTGGTAATTTAAGCACAAAGCTAGTTAGAAGCTCGGGAGCATTGTTTCCTCGCCTTTGCTTCTTTGCTTTGAAAGATATACAAGAAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGACAAGGCCCAAGGGATTGCCATGCTTTTGTGATAGTTCTTCTTGCTCTGGAACATTGCCCTCAGAAGACACTTAA 1044 0.4598 MSEPVSKSCKFNEEGRGHNTPDLLQCAELILPWLTPLELANVSLSCKALYQISKSITLRRSSDSSRGFENLAIPFRNTVDTHPYAFFIYTPSLILPSASQLLRQSWGSNFAASPNWAAELAVETVTLVDELGENVSGCNCATCGDVGDEVNWCPCSSLVGLDVASECGPSCRCGLDCGNRLSQKGTAVRLKIVRDKRKGWGLYADQLIQKGQFVCEYAGELLTTEDARRRHQYYDELASHGEFSSALLVVREHLPSGKACLRINVDATSIGNVARFINHSCDGGNLSTKLVRSSGALFPRLCFFALKDIQEDEELTFSYGEIRTRPKGLPCFCDSSSCSGTLPSEDT 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2214 347 SMART set_7 188 326 IPR001214 GO:0005515
Glsi12g2214 347 SUPERFAMILY SET domain 71 340 IPR046341 -
Glsi12g2214 347 Pfam SET domain 199 320 IPR001214 GO:0005515
Glsi12g2214 347 ProSiteProfiles SET domain profile. 188 320 IPR001214 GO:0005515
Glsi12g2214 347 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 38 338 - -
Glsi12g2214 347 ProSiteProfiles Post-SET domain profile. 327 343 IPR003616 -
Glsi12g2214 347 Gene3D SET domain 56 342 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2214 Glsi-ChrGlsi12 36774650 36776148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2214 166 342 C2H2 Transcription Factor Family AT2G23740 36.022 4.53e-24 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi12g2214 SET 1e-19 No_clan