Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2213 ATGGCAGATCAATTCCACCCTTCAATTTTTCTGGTTTTTGTGACACTTTTACTTTCTATCAATCATTCAGAGCAACTGCTATCCTCCCAGTCTCAGACACTTCTAAGAATTCAACGGCTTTTGAACTTTCCTGCTGCTTTAAGCAGCTGGAATAGCTTGACAGACTTTTGCAGCACTGAATCAAATTCTTCTCTTACTGTGGTTTGCTATGAAAACACCATAACCCAGCTGCATGTAATAGGTGAAAAGAGAGCTCCACTGCTTCCTCGGAATTTCTCTATAGATTCCTTTATCACAACGCTGGTTAGGCTTCCCCATTTGAAAGTCCTCACACTGGTTTCTCTTGGAATCTGGGGTCCATTGCCTGGTAAGATAGCTCGATTGTCATCACTGGAAATAGTTAATATAAGTTCAAATTTTCTATATGGTGCTATCCCTCAGGAGCTTTCATCACTATCCAATCTCCAGACACTCATTCTTGATGACAACATGTTTGCTGGTCAGCTCCCAGATTGGCTGGATTCACTTCCAACCTTGACTGTGTTAAGTCTGAAAAGTAATTTGTTCAACGGGTCTTTACCATATTCGTTGGGTAGCTTGGAAAATCTGAGAATTCTTTCACTTTCTCATAATCACTTATATGGAGTAGTACCTGATTTAAGCCGTTTGACAAATCTTCAAGTGCTGGAATTAGATAATAATGCTTTTGGACCTCAGTTTCCTCGACTTGGTAACAAGTTGGTTACTCTTGTATTAAGAAACAATAGGTTCAGGTCCGGTATCCCTGCTGACGTAACCTCATATTATCAGCTTGAGAGACTTGATATCTCTTCAAATACATTTGTGGGGCCATTCGATCCTACATTATTATCTCTTCCTTCTATTACTTATCTGAACATTTCTGGAAACAGACTTACAGGGATGCTTTTTGAGAATCTATCTTGCAATTCTGAACTCCAAGTCGTAGATTTTTCCTCAAATCTTTTGACTGGAAGCTTACCTAGATGTTTGCTGTCAAAATCCAATGATATGACTGTCCTGTATGCTAGAAATTGTCTACAAAATACGAATCAGAAGCAGCAACCACTGCCCTTTTGCCATACTGAAGCCTTGGCTGTGGGAATAGTACCCGAGAGAAAGAAGCACAAAAATGCATCTAAGGTAACCCTTTGCCTTGGGATAGTAGGTGGAACACTTGGAGGAGTAGCACTTGTTGCGCTGATTTTCTTAATTATTCGAAGAGGAAATGATAAAAGCAAAACTAAGAATCCTCCAACACGATTAATATCAGAGTACGCATCAAAGTTTCTTTCTGATGCAAGATACATATCTCAAACGATGAAGTTGGGAACAGTCGGCCTGCCAGCTTATCGAACTTTCTCTCTGGAAGAGATTGAGGTTGCAACAAACAACTTTGACACAACTTCTTTCATGGGCGAAAGTCCTCATGGCCATGGGCAGATGTACAGAGGTCAGCTGAAGGATGGTTCTCTTGTGGCCATTAGATGCGTAAAAATGAGAAAAGGCTACAGCACTCAAAACTTTATGCACCACATAGAGCTGATATCAAAACTTAGGCATCGTCACTTAGTCACTGCTCTTGGACACTGCTTTGAATGTTATTTAGATGATTCAACTGTCAGCAGAATATTTCTTGTCTTCGAATACGTACCAAATGGCACACTCAAGAGCTGGATCTCTGATAGGCACTCTAAAAAATCGCTTAGTTGGACTCAACGCATAGAAGCTGCAATTGGAGTAGCAAAGGGTATCCAGTTTTTGCATACGGGGGTTGTCCCTGGTGTATATTCAAACAATCTCAAAACAACAAGTGTTTTATTGGATCAGAATCTCGTTGCAAAAATCAGCAGTTATAACCTGCCCTTGTTATCTAACATGGGAAAGGATGGAGAAGGAATTTCTTCCGGCGTATCCAAAAGTCCTAGCGTTAACAAAAGTATAAAACATGAAGAAAAGTCCGATATATTCGACTTTGGGGTAATACTACAGGAAATCATTCTGGGAAGGGCAGCAAAGTCAAGGAATGAGGTGGACGCTTTAAAGGTTCTGTTTCAAGCAAGCATAGTAGCAGATGAGGAAGCTCGGAGGAGCATTGTAGACGCAGCAGTTCGCAAGGCATGCTTGGATCTATCATTGAAGACAATGATGGAGATTTGCACGAGGTGCCTGGTAAAAGACCCAGCAGATAGGCCTTCCATCGAGGATGTTTTGTGGAATTTGCAGTTTGCTGCTCAAGTTCAGGATGCATGGCGAGGGGAGTCTCAAAGTAGTGAGGGGTCTCCAGGCTCACCTTATGAACCTCGAAGACTCACCTTCCATTAG 2343 0.4144 MADQFHPSIFLVFVTLLLSINHSEQLLSSQSQTLLRIQRLLNFPAALSSWNSLTDFCSTESNSSLTVVCYENTITQLHVIGEKRAPLLPRNFSIDSFITTLVRLPHLKVLTLVSLGIWGPLPGKIARLSSLEIVNISSNFLYGAIPQELSSLSNLQTLILDDNMFAGQLPDWLDSLPTLTVLSLKSNLFNGSLPYSLGSLENLRILSLSHNHLYGVVPDLSRLTNLQVLELDNNAFGPQFPRLGNKLVTLVLRNNRFRSGIPADVTSYYQLERLDISSNTFVGPFDPTLLSLPSITYLNISGNRLTGMLFENLSCNSELQVVDFSSNLLTGSLPRCLLSKSNDMTVLYARNCLQNTNQKQQPLPFCHTEALAVGIVPERKKHKNASKVTLCLGIVGGTLGGVALVALIFLIIRRGNDKSKTKNPPTRLISEYASKFLSDARYISQTMKLGTVGLPAYRTFSLEEIEVATNNFDTTSFMGESPHGHGQMYRGQLKDGSLVAIRCVKMRKGYSTQNFMHHIELISKLRHRHLVTALGHCFECYLDDSTVSRIFLVFEYVPNGTLKSWISDRHSKKSLSWTQRIEAAIGVAKGIQFLHTGVVPGVYSNNLKTTSVLLDQNLVAKISSYNLPLLSNMGKDGEGISSGVSKSPSVNKSIKHEEKSDIFDFGVILQEIILGRAAKSRNEVDALKVLFQASIVADEEARRSIVDAAVRKACLDLSLKTMMEICTRCLVKDPADRPSIEDVLWNLQFAAQVQDAWRGESQSSEGSPGSPYEPRRLTFH 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2213 780 Gene3D Ribonuclease Inhibitor 27 241 IPR032675 -
Glsi12g2213 780 SMART LRR_typ_2 292 312 IPR003591 -
Glsi12g2213 780 SMART LRR_typ_2 152 176 IPR003591 -
Glsi12g2213 780 SMART LRR_typ_2 200 223 IPR003591 -
Glsi12g2213 780 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 27 244 - -
Glsi12g2213 780 MobiDBLite consensus disorder prediction 758 780 - -
Glsi12g2213 780 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 445 556 - -
Glsi12g2213 780 SUPERFAMILY L domain-like 35 352 - -
Glsi12g2213 780 ProSiteProfiles Leucine-rich repeat profile. 202 224 IPR001611 GO:0005515
Glsi12g2213 780 ProSiteProfiles Protein kinase domain profile. 472 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2213 780 Gene3D Ribonuclease Inhibitor 242 362 IPR032675 -
Glsi12g2213 780 Gene3D Transferase(Phosphotransferase) domain 1 558 757 - -
Glsi12g2213 780 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 557 763 - -
Glsi12g2213 780 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 80 747 - -
Glsi12g2213 780 Pfam Protein tyrosine and serine/threonine kinase 486 744 IPR001245 GO:0004672|GO:0006468
Glsi12g2213 780 SUPERFAMILY Protein kinase-like (PK-like) 453 749 IPR011009 -
Glsi12g2213 780 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase isoform A 245 362 - -
Glsi12g2213 780 Gene3D Phosphorylase Kinase; domain 1 450 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2213 Glsi-ChrGlsi12 36769596 36773526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2213 43 768 Miscellaneous Gene Families AT3G03770 63.501 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Glsi12g2213 PK_Tyr_Ser-Thr 6.6e-23 CL0016