Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2203 ATGATCAAGCTATTGCTGCAAAAGGGTGCCAATAAAGATGTGAGAAATGGGTTGGGAAAAACTGCATATGATGTTGCAGCCGAGAATGGCCATACCCGTCTCTTCGACGCGCTTAAATTAGGGGACAATTTGTGCGTGGCGGCGAGAAAAGGAGAAGTGAGAAAGATACAGAGGCTACTTGAGAATGGAGCAGCCATTAATGGGAGAGACCAACATGGCTGGACAGCACTGCACAGAGCTGCCTTTAAAGGGCGAACAGATGCGGTTCGGGCACTACTGGAGAAAGGGATAGATGCGGATGCCAAAGACGAAGATGGGTACACAGCGCTGCATTGTGCGGCGGAGTCAGGGCATGCGGATTTGACAGAGCTGTTGGTGAAGAAGGGAGCAGACGTTGAAGCCAGAACCGATAAGGGTGTGACGGCGCTGCAAATAGCAGAGTCACTGCACTATGTGGGGATCACAAGGATACTCGTCAATGGTGGGGGTAGTAGGGAGAGTACAGGCCCAATTCCAGCACTGGCTGCGATTCCATTTGGGAATAAAACGGAGGCTGTGGAGAAAAAGAAGAAGACGACAAGAAACAGAGGGCTCCGGGGAAGCTTCGATCGCTCAGCGGCTTTAGCTATGGTCTAG 636 0.5142 MIKLLLQKGANKDVRNGLGKTAYDVAAENGHTRLFDALKLGDNLCVAARKGEVRKIQRLLENGAAINGRDQHGWTALHRAAFKGRTDAVRALLEKGIDADAKDEDGYTALHCAAESGHADLTELLVKKGADVEARTDKGVTALQIAESLHYVGITRILVNGGGSRESTGPIPALAAIPFGNKTEAVEKKKKTTRNRGLRGSFDRSAALAMV 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2203 211 SMART ANK_2a 138 167 IPR002110 GO:0005515
Glsi12g2203 211 SMART ANK_2a 72 101 IPR002110 GO:0005515
Glsi12g2203 211 SMART ANK_2a 29 68 IPR002110 GO:0005515
Glsi12g2203 211 SMART ANK_2a 105 134 IPR002110 GO:0005515
Glsi12g2203 211 Pfam Ankyrin repeats (3 copies) 44 135 IPR002110 GO:0005515
Glsi12g2203 211 ProSiteProfiles Ankyrin repeat region circular profile. 72 104 - -
Glsi12g2203 211 Gene3D - 110 160 IPR036770 -
Glsi12g2203 211 Gene3D - 1 38 IPR036770 -
Glsi12g2203 211 PRINTS Ankyrin repeat signature 73 88 IPR002110 GO:0005515
Glsi12g2203 211 PRINTS Ankyrin repeat signature 121 135 IPR002110 GO:0005515
Glsi12g2203 211 ProSiteProfiles Ankyrin repeat profile. 72 104 IPR002110 GO:0005515
Glsi12g2203 211 SUPERFAMILY Ankyrin repeat 1 162 IPR036770 -
Glsi12g2203 211 PANTHER MYOTROPHIN 1 164 - -
Glsi12g2203 211 Gene3D - 39 109 IPR036770 -
Glsi12g2203 211 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515
Glsi12g2203 211 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2203 Glsi-ChrGlsi12 36684412 36685047 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2203 76 159 Acyl Lipid Metabolism Gene Families AT5G53470 35.714 1.07e-09 55.5