Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi12g2192 | ATGTCTACACTCTACATGTTTTCAATTTCTGTAATTTTTATTGTGGGACTGGAGCAGCACGAAGCAGTTAGAGATGTTGAGAGGAAGTTTCTTGATTTACAACAGATATTCTTGGACATCGCAGTGCTAGTTGATGCACCGGGGGACATGCTTGACAATATAAAATCACAGGTCTCAAAGGCAGTAGATCACGTGCAGCAAGGCAATAATGCTCTTCAGAAGGCCAAAAACCTGCAGAAAAATCCTAGAAAATGGATATGCGGTGCAATCCTTATACTTCTTATTATTGTTGTAATTACAGTCGTTGCTGTCATCAAACCAGGGGTTATAAAAAGGTTGCTTAATTACTCATAG | 354 | 0.3927 | MSTLYMFSISVIFIVGLEQHEAVRDVERKFLDLQQIFLDIAVLVDAPGDMLDNIKSQVSKAVDHVQQGNNALQKAKNLQKNPRKWICGAILILLIIVVITVVAVIKPGVIKRLLNYS | 117 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi12g2192 | 117 | Pfam | Syntaxin | 19 | 47 | IPR006011 | GO:0016020 | |
| Glsi12g2192 | 117 | Pfam | SNARE domain | 49 | 101 | IPR000727 | - | |
| Glsi12g2192 | 117 | Gene3D | - | 17 | 106 | - | - | |
| Glsi12g2192 | 117 | FunFam | Syntaxin 132 | 8 | 106 | - | - | |
| Glsi12g2192 | 117 | PANTHER | SYNTAXIN | 18 | 97 | IPR045242 | - | |
| Glsi12g2192 | 117 | SUPERFAMILY | SNARE fusion complex | 18 | 80 | - | - | |
| Glsi12g2192 | 117 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 18 | 75 | IPR000727 | - | |
| Glsi12g2192 | 117 | CDD | SNARE_syntaxin1-like | 18 | 74 | - | - | |
| Glsi12g2192 | 117 | SMART | tSNARE_6 | 8 | 75 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi12g2192 | Glsi-ChrGlsi12 | 36591089 | 36592155 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi12g2192 | 18 | 107 | SNARE and Associated Proteins | AT3G03800 | 68.889 | 3.17e-32 | 113 |