Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2190 ATGGAAGCCGGGGCGAAGGTAGTTTTGTTGCTGTATATTGAGCTGAGCTATCGTGTTTCCTGAAGGTTACATGGAGCAAGATTCATTGAAGAGAATCCTGCCCCTCGCATATGGAATGTAAAAGCTCTTCTGGGGAGCTTCTTAGTTACATTGTCTGATAAAAGATGTTCACCTGAGCATTATGCGTCTCCTGCTGAAATTCGCAGCTGCTGGCGAACTTTGGTGGAATTTCAATGCTTTACAGAAGAATCATTTGAGATCCCACGTGGGCAGGGCCATGGAGGTGGAGATATTGAGCTAGGGGCATATGCGTTGAATTCAGGAGAAATAGGTTTGGTTAGCTTCTTCAACAAGGTTCCAGAGCTTGATAAACAATATTCAAAGCTGGATAAGCTTCTGAGAAAGCTCCAGTTGAACCAAGTCTTGCAAAAGTCTCTTCACATTTATTTACTGTTTATACCCGAGATTTCTATAGGATATCCCAGGAGATTTTATGCAGCTTCCTTAACAGATAAAAATAAAATTAAAGAAAAATCTGATTTTGCTTCTGTTGTAGTATTTGCTGTTACAGAGGGAATGGAGAAAGACGTTGATGAAGTAAAGACAATTGCCCATCAAATCAAGACAAAAATTGAAGAATTAGACAAGCAAGTGAGAAGTGAGATAGATACTGCTTATCCTTTTGTGTTATCTTCAATACCTGGATTCTTGATCCTGCGGGAAGCCATCCATCAAGAATATTGCGAGGTTGTTCAAAGGCATGTCTTTACAGTGACGGGCACAATAGCTGATGAGGAGATGTTCTTGGATATCGCAGTGCTAGTTGATGCACAGGGGGACGTGCTCGACAAAATAAAATCACAGGTCTCAAAGGCAGTAGATCACGTGCAGCAAGGAAATAATGCCCTTCAGAAGGCCAAAAACCTGCAGAAAATTTCTAGAAAATGGATATGCGTTGCAATCCTTATACTTCTTATTATTGTTGTAATTACAGTCGTTGCTGTCATCAAACCGGGGGTGATAAAAAGGGTGCTTAATTACTCACAGGAACGGGGGTACGAAGCAAATCAACCAAATTCATATTTTATTGATTCAGTGAACCACTTTGGCGGTGAAGTCGGCTGTAGAAAGGCATAA 1137 0.4099 MEAGAKVVLLLYIELSYRVSXRLHGARFIEENPAPRIWNVKALLGSFLVTLSDKRCSPEHYASPAEIRSCWRTLVEFQCFTEESFEIPRGQGHGGGDIELGAYALNSGEIGLVSFFNKVPELDKQYSKLDKLLRKLQLNQVLQKSLHIYLLFIPEISIGYPRRFYAASLTDKNKIKEKSDFASVVVFAVTEGMEKDVDEVKTIAHQIKTKIEELDKQVRSEIDTAYPFVLSSIPGFLILREAIHQEYCEVVQRHVFTVTGTIADEEMFLDIAVLVDAQGDVLDKIKSQVSKAVDHVQQGNNALQKAKNLQKISRKWICVAILILLIIVVITVVAVIKPGVIKRVLNYSQERGYEANQPNSYFIDSVNHFGGEVGCRKA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2190 378 PANTHER SYNTAXIN 266 325 IPR045242 -
Glsi12g2190 378 SUPERFAMILY SNARE fusion complex 265 311 - -
Glsi12g2190 378 Pfam SNARE domain 281 332 IPR000727 -
Glsi12g2190 378 CDD SNARE_syntaxin1-like 266 305 - -
Glsi12g2190 378 Gene3D - 244 337 - -
Glsi12g2190 378 SUPERFAMILY t-snare proteins 193 299 IPR010989 GO:0016020|GO:0016192
Glsi12g2190 378 Coils Coil 197 217 - -
Glsi12g2190 378 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 267 306 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2190 Glsi-ChrGlsi12 36578635 36587913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2190 97 338 SNARE and Associated Proteins AT3G03800 37.580 2.44e-39 140