Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2187 ATGGAAATTCAATTCCAGCAACCAAAGCAGCATCAGAAAGTTGGCATTCCAAAAAGCAAAGGGGGCAGATCAGTCAAAGGAAGAAACAGAAGCAGCAACGTTAACAAATTTGTTGGGGTGAGACAAAGGCCTTCGGGGAGATGGGTAGCTGAGATCAAAGACACAACCCAGAAGATAAGAATGTGGCTTGGCACTTTTGAGACTGCGGAAGAGGCAGCCAGAGCTTATGATGAAGCTGCATGCCTCCTTCGTGGATCCAATACTCGCACCAACTTTATCACCCATGTCTCCTTGGATTCTCCTCTTGCTTCTCGGATTCGGAATCTTCTTAACAACAAAAAAGGAACCAGACAAGAAGAACATGTGGATGCCTCTGCCCCTAGAGTTAGCAGCACCACTAGCAGTACTAGTATTAGTAGTAATTCTATCAATATTGACAACTCTGTTTCCAGTGGGACAATTCAAGATACCCAGTTGTTTGATGATGCGTATAGACCAGATTTGAGCAGTTGCAGAGAGGAATTTGAGTTAGGTTCCCAGTCCAATCATTCATGGGGTTTTGGACCTGTTTTTGACCGTTTTCCTTTTGTTCACGTTTCGGACATCCCAAGGACTTATGAGAGTCTGCCTGAGACAGCTGAGTTAGAGCTTTCAGAATTTGAAAGGATGAAAGTTGAAAGACAAATATCAGCTTCGCTATATGCAATTAATGGAGTGCAAGAGTACATGGAAACTGTGCAGGACTCTAATGAAGCTCTATGGGATCTTCCACCCTTGTGTTCACTCTTCTGTTAA 795 0.4365 MEIQFQQPKQHQKVGIPKSKGGRSVKGRNRSSNVNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGTRQEEHVDASAPRVSSTTSSTSISSNSINIDNSVSSGTIQDTQLFDDAYRPDLSSCREEFELGSQSNHSWGFGPVFDRFPFVHVSDIPRTYESLPETAELELSEFERMKVERQISASLYAINGVQEYMETVQDSNEALWDLPPLCSLFC 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2187 264 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Glsi12g2187 264 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Glsi12g2187 264 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Glsi12g2187 264 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Glsi12g2187 264 MobiDBLite consensus disorder prediction 125 142 - -
Glsi12g2187 264 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 230 - -
Glsi12g2187 264 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Glsi12g2187 264 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Glsi12g2187 264 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Glsi12g2187 264 MobiDBLite consensus disorder prediction 1 30 - -
Glsi12g2187 264 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
Glsi12g2187 264 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Glsi12g2187 264 MobiDBLite consensus disorder prediction 112 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2187 Glsi-ChrGlsi12 36560706 36561500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2187 10 264 AP2-EREBP Transcription Factor Family AT5G19790 43.511 1.72e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi12g2187 AP2 5.7e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2187 12 36560706 36561500 Glsi12g2187 12 36560706 36561500 ECH