Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2175 ATGCCAGAGTTGAGAAGTGGAGCTAGAAGATCCAAACGGCTCGGTGATCTTCAGCCTGCCCCACTACCTGTTGATCAAGGAGAGAATTGTGTACAACCTGCTCCAAACAGAACCAGGAGGAGAGTTGGAGGTGGAAGAGGAAGAGGAGGTAATGCCACAGCTGTAGCAAAAGGGCCTTCACCAGCCATACCCACAAGGCGAACTGGAGCTGGTAGAGGTCGGGGAGTAAGATTAATTAATCTTGACCCTGAACCTTGTGAGGTCCTTCCTAATCCTGTCGCATTAGGAGCTGCCCCAGAACCCCTTCGTGTTGAGGCAGTGGCCAATAATAATATTGTGATGGAAGGTGGAAGTGCAGACAAGATGGTGGGAGCTGAAGAGGAAGCAACCACAACCCCCATTCCTGAGAGGGTGCAAGTTGGCTGTTCTCCTGTGTATAAGACAGAAAGGAAATTAGGTAAGGGTGGTTTTGGCCAAGTGTATGTTGGCAAAAGGGTAAGTGGTGGCTCTGATCGGACAGGTCCTGATGCAATTGAGGTTGCACTAAAGTTTGAGCATAGAAATAGTAAAGGTTGCAATTATGGACCTCCTTATGAGTGGCAAGTCTACAATACTCTGAATGGGTGTTATGGCATTCCCTGGGTTCATTACAAAGGTCGTCAAGGAGATTTTTATATTCTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGACGTATGGAATTCTCTTGGTCAATCGATGTCACCAAGTATGGTTGCTTGCATTGCAGTGGAGGCAATATCAATTCTTGAGAAGCTCCACTTGAAAGGGTTTGTGCATGGAGATGTAAAGCCAGAAAACTTTTTACTTGGTCAACCTGGAACAGCTGATGAGAAGAAGCTATATCTTATTGATCTTGGTCTGGCTTCTAGATGGAAGGATGCTTCATCTGGTCAACATGTTGATTATGATCAGAGACCTGATATTTTCAGGGGAACAATAAGGTATGCCAGTGTGCATGCACATTTAGGTAGGACTGGAAGTCGAAGGGATGATCTCGAGTCACTGGCATACACATTAATATTTCTCATAAAAGGGAGGTTACCCTGGCAGGGTTATCAGGGTGACAACAAAAGTTTTCTTGTTTGTAAGAAAAAGATGGCCACGTCTCCAGAGTTGATGTGCTGCTTTTGTCCTGCCCCGTTCAAGCAATTCCTTGAAGCTGTTACTAACATGAGATTTGATGAGGAACCAAATTACTCCAAGCTTATATCATTTTTTGAAAGCTTAATTGAAGCATGTGTACCATTGAGACCAATCAGAATTGATGGAGCTTTAAAGGTTGGACAAAAGCGGGGAAGGATGCTTATCAATCTGGAAGAAGATGAGCAGCCGAAGAAGAAGATACGAATGGGGAGTCCTGCCAACCAATGGATTTCAGTTTATAATGCACGCCGTCCTATGAAGCAGAGATATCACTATAACGTAGCAGACACTAGGCTCCGGCAGCATGTAGACAAGGGAAACGAGGATGGGTTGTATATAAGCTGTGTCGCCTCTGCAGCAAATCTATGGGCCCTAATCATGGATGCAGGAACAGGTTTCTCTTCCCAGGTTTATGAATTGTCAGCAGTCTTCCTTCATAAGGACTGGATTATGGAACAATGGGAGAAAAATTACTATATCAGTTCAATAGCTGGTGCAGCTAATGGGAGTTCCTTGGTCGTCATGTCCAAAGGAACTCCTTACACACAGCAGTCCTACAAAGTGAGTGAATCATTCCCTTTCAAGTGGATTAATAAGAAGTGGAAAGAAGGATTCCATGTTACCTCCATGACTACTGCTGGCTGTCGCTGGGGTGTTGTTATGTCCAGGAATGCTGGGTATTCTGATCAGGTTGTGGAGCTTGACTTTCTATATCCAAGTGAAGGAATACACCGGCGATGGGAGAGTGGTTACCGGATAACATCTATGGCCGCTACTGCAGATCAGGCAGCCTTCATACTGAGCATACCAAAACGTAAATTGCTTGATGAAACTCAAGAGACTTTGCGTACCTCTGCATTCCCTAGCACCCATGTAAAGGAAAAATGGTCCAAGAATCTCTATATTGCGTCAATCTGTTTTGGGCGGACTGTTTGTTAG 2124 0.4506 MPELRSGARRSKRLGDLQPAPLPVDQGENCVQPAPNRTRRRVGGGRGRGGNATAVAKGPSPAIPTRRTGAGRGRGVRLINLDPEPCEVLPNPVALGAAPEPLRVEAVANNNIVMEGGSADKMVGAEEEATTTPIPERVQVGCSPVYKTERKLGKGGFGQVYVGKRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYNTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPSMVACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGTADEKKLYLIDLGLASRWKDASSGQHVDYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMATSPELMCCFCPAPFKQFLEAVTNMRFDEEPNYSKLISFFESLIEACVPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKIRMGSPANQWISVYNARRPMKQRYHYNVADTRLRQHVDKGNEDGLYISCVASAANLWALIMDAGTGFSSQVYELSAVFLHKDWIMEQWEKNYYISSIAGAANGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGCRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWESGYRITSMAATADQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWSKNLYIASICFGRTVC 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2175 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Glsi12g2175 707 SUPERFAMILY Protein kinase-like (PK-like) 146 426 IPR011009 -
Glsi12g2175 707 Pfam Protein kinase domain 146 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2175 707 MobiDBLite consensus disorder prediction 1 73 - -
Glsi12g2175 707 PANTHER CASEIN KINASE-RELATED 146 671 - -
Glsi12g2175 707 FunFam Casein kinase 1-like protein 118 466 - -
Glsi12g2175 707 CDD STKc_CK1 146 420 - -
Glsi12g2175 707 SMART serkin_6 146 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2175 707 ProSiteProfiles Protein kinase domain profile. 146 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2175 707 ProSitePatterns Protein kinases ATP-binding region signature. 152 183 IPR017441 GO:0005524
Glsi12g2175 707 Gene3D Transferase(Phosphotransferase) domain 1 117 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2175 Glsi-ChrGlsi12 36495963 36501724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2175 263 420 MAP Kinase Kinase Kinase AT5G50180 23.750 5.68e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Glsi12g2175 Pkinase 6.6e-16 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2175 12 36495963 36501724 Glsi12g2175 12 36495963 36501724 ECH