Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2168 ATGGCAATTGCACGAACAGGAGTGTACGTCGACGACTATTTGGAATACGCAAGCACATTGCCTGCTGAACTTCAGAGACTGCTCAACACCATCCGGGAACTCGATGAAAGATCCCAATCTATGATAAACCTGACCAGGCAGCACACGAGGTACTGTTTGGGTTTGTCATCACATGGCTCTAAGAAGGTTTATTCCTATATTAACAATAACACCACTGAAGACGACGACGCGACCATTGAGAAAATGCATAAAGAAATTGAAGCTAATCAGGATAGCGCATTAAGCCTATGTACTGAGAAGGTTTTGTTGGCACGACAAGCATATGACCTGATAGATAGCCATGTAAAACGACTTGATGAGGATTTGAACAACTTTGCTGAAGATCTAAAGCAAGAAGGAAAAATAGCACCAGATGAACCAGCTATTCTCCCCCCATTGCCTATAGTCCCAAAAAGTGAAAAACGCAAGTCCTTATATGGAACTCCTCTATCAAAGAGACTTGATTATAGGGATAGAGACTGGGATCGGGAGCGTGATAGGGACTTTGAGCTCATGCCCCCACCAGGAAGCCATAAGAAGGAGTATGCACTTCCCATGGATATTGACCAACCCATTGATCCAAATGAACCCACATATTGTGTTTGTCATCAGGTGTCTTTTGGAGATATGATTGCATGTGACAATGAAAACTGCCAAGGAGGTGAATGGTTCCACTATGCGTGTGTTGGCCTAACTCCGGAGACAAGATTCAAGGGAAAGTGGTACTGTCCAACTTGCAGACCACAATGTCAATGA 795 0.439 MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDERSQSMINLTRQHTRYCLGLSSHGSKKVYSYINNNTTEDDDATIEKMHKEIEANQDSALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIAPDEPAILPPLPIVPKSEKRKSLYGTPLSKRLDYRDRDWDRERDRDFELMPPPGSHKKEYALPMDIDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRPQCQ 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2168 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 262 IPR013083 -
Glsi12g2168 264 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 125 IPR024610 -
Glsi12g2168 264 SMART ING_2 9 125 IPR024610 -
Glsi12g2168 264 FunFam PHD finger protein ING 204 262 - -
Glsi12g2168 264 CDD PHD_ING 212 259 - -
Glsi12g2168 264 ProSiteProfiles Zinc finger PHD-type profile. 210 262 IPR019787 -
Glsi12g2168 264 SUPERFAMILY FYVE/PHD zinc finger 187 261 IPR011011 -
Glsi12g2168 264 SMART PHD_3 212 260 IPR001965 -
Glsi12g2168 264 Coils Coil 24 44 - -
Glsi12g2168 264 CDD ING_plant 17 122 - -
Glsi12g2168 264 Pfam PHD-finger 212 261 IPR019787 -
Glsi12g2168 264 Gene3D - 5 123 - -
Glsi12g2168 264 PANTHER INHIBITOR OF GROWTH PROTEIN 2 260 IPR028651 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2168 Glsi-ChrGlsi12 36467515 36470939 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi12g2168 ING 1.3e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2168 12 36467515 36470939 Glsi12g2168 12 36467515 36470939 ECH