Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2161 ATGGATGTTCGCCGGAATGTATCAGTTTCCGGTGAGTGCCAGCAAGAGCAGGTCCTTTCCACCTTCTCAAGCAGCCTTGACGACCTCTTCTCTGCTCAGAACACGGAGGTGGATGTTGGATTGGAGTGGTTGTCAGTATTTGTGGAAGACTGCTTTTCCAGACCAGGAAGCTGCCTCTTGGCACCTACTGAAGTTCAAGCTACAAGCACAAGCTCCAAACCCTCGACATCATTGCAGATAACCCAGCAAAATCAGTCTCCTCTGCAAAATTTTGTGGTGCCTGGAAAGGCAAGAAGCAAAAGGAAAAGGCTTTCAGCCCCTAGAACCAAAGACCCTTTGAGCATCTGGTCACACCATTTAAACCCACAAAACGAAGTCTTAAGCTCAGACCCTCCTCTTCTGAAACAGACTTACTGGTTGGCCGACAGTGAACTCATTGTCCCTAACAAGAAAGATGAGCAGCAAGTAAACAAAGACGGAGAAGTAATAAAGGTGGAGAAGGGGGTTGTGAAGAAGGAGAAGGAGAGCTTGGGGAGCTCTGAGTGTGAGGTTAGCAATGGGCAACATCCAATACCAAGGAGGTGCACCCATTGCCTGGCACAGAGGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAATCTGGTAGGTTGCTGCCAGAGTATAGGCCAGCCAAGAGTCCAACTTTTGTGAGCTACTTGCACTCCAATTCCCATAAGAAAGTCATGGAGATGAGAACGGCCGTTGTGTCTTCTATTCCTAGAGAGCACTAG 807 0.4882 MDVRRNVSVSGECQQEQVLSTFSSSLDDLFSAQNTEVDVGLEWLSVFVEDCFSRPGSCLLAPTEVQATSTSSKPSTSLQITQQNQSPLQNFVVPGKARSKRKRLSAPRTKDPLSIWSHHLNPQNEVLSSDPPLLKQTYWLADSELIVPNKKDEQQVNKDGEVIKVEKGVVKKEKESLGSSECEVSNGQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRTAVVSSIPREH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2161 268 ProSitePatterns GATA-type zinc finger domain. 195 220 IPR000679 GO:0006355|GO:0043565
Glsi12g2161 268 Pfam GATA zinc finger 195 229 IPR000679 GO:0006355|GO:0043565
Glsi12g2161 268 CDD ZnF_GATA 194 241 IPR000679 GO:0006355|GO:0043565
Glsi12g2161 268 FunFam GATA transcription factor 185 266 - -
Glsi12g2161 268 PANTHER GATA TRANSCRIPTION FACTOR 23 259 - -
Glsi12g2161 268 SMART GATA_3 189 243 IPR000679 GO:0006355|GO:0043565
Glsi12g2161 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 253 - -
Glsi12g2161 268 Gene3D - 185 263 IPR013088 GO:0006355|GO:0008270
Glsi12g2161 268 ProSiteProfiles GATA-type zinc finger domain profile. 193 225 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2161 Glsi-ChrGlsi12 36442282 36443421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2161 41 257 C2C2-Gata Transcription Factor Family AT4G32890 40.969 5.74e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi12g2161 GATA 1.1e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2161 12 36442282 36443421 Glsi11g1598 11 10020768 10022374 CCT
Glsi12g2161 12 36442282 36443421 Glsi12g2161 12 36442282 36443421 ECH